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WormBase Tree Display for Gene: WBGene00022678

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Name Class

WBGene00022678SMapS_parentSequenceZK180
IdentityVersion2
NameCGC_namesar-1Paper_evidenceWBPaper00031857
Sequence_nameZK180.4
Molecular_nameZK180.4
ZK180.4.1
CE07622
Other_nameCELE_ZK180.4Accession_evidenceNDBBX284604
Public_namesar-1
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:06WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
219 Aug 2008 16:49:32WBPerson2970Name_changeCGC_namesar-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsar
Allele (23)
StrainWBStrain00037545
RNASeq_FPKM (74)
GO_annotation (21)
Contained_in_operonCEOP4124
Ortholog (38)
Paralog (14)
Structured_descriptionAutomated_descriptionPredicted to enable GTPase activity. Involved in embryo development. Predicted to be located in endoplasmic reticulum exit site. Predicted to be part of COPII vesicle coat. Human ortholog(s) of this gene implicated in chylomicron retention disease. Is an ortholog of human SAR1A (secretion associated Ras related GTPase 1A) and SAR1B (secretion associated Ras related GTPase 1B).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0060357Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:10535)
Molecular_infoCorresponding_CDSZK180.4
Corresponding_transcriptZK180.4.1
Other_sequence (144)
Associated_feature (12)
Experimental_infoRNAi_result (17)
Expr_patternExpr1015432
Expr1040022
Expr1162692
Expr2015596
Expr2033831
Drives_constructWBCnstr00024059
Construct_productWBCnstr00024059
Microarray_results (20)
Expression_clusterWBPaper00032528:L3_enriched
WBPaper00035073:mitochondria_protein
WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038289:oocyte_protein
WBPaper00040134:nhr-49(RNAi)_regulated_protein
WBPaper00040221:DAF-12_target_ALF4
WBPaper00040412:germline-regulated_daf-16_target
WBPaper00043951:insoluble_protein_day16_N2
WBPaper00044616:alg-3-4_downregulated_gene
WBPaper00044736:flat_dev_expression
WBPaper00045521:Gender_Neutral
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
WBPaper00046691:P1_enriched
WBPaper00048910:Apoptosis-induced_mRNA-interacting_protein
WBPaper00048910:mRNA-interacting_protein
WBPaper00048923:Aging_regulated
WBPaper00048988:neuron_expressed
WBPaper00049498:npr-1(ur89)_regulated_3
WBPaper00049545:cco-1(RNAi)_upregulated
WBPaper00050468:hlh-30-dependent_Cry5B_regulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:body-muscle_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00050990:pharynx_expressed
WBPaper00050990:seam_expressed
WBPaper00051039:germline_enriched
WBPaper00051245:body-wall-muscle_cytoplasm_expressed
WBPaper00051245:epidermis_cytoplasm_expressed
WBPaper00051245:epidermis_nucleus_expressed
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00051245:pharyngeal-muscle_cytoplasm_expressed
WBPaper00051461:pig-1(gm344)_upregulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053289:DREAM-target
WBPaper00053321:embryo-to-L1_downregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_downregulated_L1_SMARTseq
WBPaper00053388:dauer_regulated_Cluster5
WBPaper00053615:SMO-1_target
WBPaper00055648:germline_expressed
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056284:ints-5(RNAi)_downregulated
WBPaper00056443:sek-1(km4)_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056471:S.aureus-4h_downregulated_N2
WBPaper00057288:Cold_downregulated_transcript
WBPaper00058691:cfp-1(tm6369)_upregulated
WBPaper00058691:set-2(bn129)_upregulated
WBPaper00059174:MEG-3_interacting
WBPaper00059254:CSR-1_interacting
WBPaper00059356:BAZ-2_SET-6_interacting
WBPaper00059471:EGL-43_interacting
WBPaper00059763:neuron_expressed
WBPaper00061274:hypergravity_15xg_upregulated
WBPaper00061377:MYRF-1_interacting
WBPaper00061527:cdc-42_17192-rab-5_18073
WBPaper00061527:nhr-46_2300-unc-108_2961
WBPaper00061902:camt-1(ok515)_regulated_RMG
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062498:PPM-1.D_interacting
WBPaper00062554:MAGU-2_interacting
WBPaper00062590:Aging_downregulated_neuron
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064071:NHR-49_interacting
WBPaper00064130:Beta-Amyloid_downregulated_protein
WBPaper00064201:SNA-3_interacting
WBPaper00064716:paraquat_upregulated
WBPaper00064789:Day12_vs_Day1_downregulated_neuron
WBPaper00065120:body-muscle-transcriptome
WBPaper00065158:AFD_depleted
WBPaper00025032:cluster_99
WBPaper00025032:cluster_105
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026952:class_E
WBPaper00026980:intestine_enriched
WBPaper00031003:hlh_1_enriched
WBPaper00032165:differentially_expressed_with_age_medoid_5
WBPaper00034739:N2lessDR1350
WBPaper00035905:FBF-1_Associated
WBPaper00036286:Pattern_G
WBPaper00037901:GLD-1_mRNA_targets
WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2down
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
[cgc5767]:cluster_6
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(23_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_MD
[cgc5767]:expression_class_MDE
[cgc5767]:expression_class_MD_pd(23_min)
[cgc5767]:expression_class_ME
Interaction (111)
Map_infoMapIVPosition0.447421Error0.013819
PositivePositive_cloneZK180Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00025163
WBPaper00027296
WBPaper00031857
WBPaper00038491
WBPaper00049828
WBPaper00050029
WBPaper00055090
WBPaper00060970
WBPaper00064057
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene