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WormBase Tree Display for Gene: WBGene00022159

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Name Class

WBGene00022159SMapS_parentSequenceY71G12B
IdentityVersion2
NameCGC_namemppa-1Paper_evidenceWBPaper00027699
Sequence_nameY71G12B.24
Molecular_nameY71G12B.24a
Y71G12B.24a.1
CE48095
Y71G12B.24b
CE49612
Y71G12B.24b.1
Other_nameCELE_Y71G12B.24Accession_evidenceNDBBX284601
Public_namemppa-1
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:05WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
228 Jul 2006 09:57:21WBPerson2970Name_changeCGC_namemppa-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classmppa
Allele (443)
RNASeq_FPKM (74)
GO_annotation00089114
00089115
00089116
00089117
00089118
00089119
00089120
00089121
00126335
OrthologWBGene00060476Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00040793Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00142634Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00158423Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00089948Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00130482Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00234197Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g12323Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g6262Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g7994Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g14828Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g6675Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g519Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g2972Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g11932Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g13514Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g16248Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g20787Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g20788Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00577.g12411Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_14335.g24606Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-mppa-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold451.g1311Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_01278.g19804Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_17331Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_17335Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_001193Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g01859Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g19874Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10310800Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrI_pilon.g233Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00239958Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00257654Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00288463Trichuris murisFrom_analysisWormBase-Compara
SGD:S000001066Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
FB:FBgn0033235Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-030131-5809Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:18667Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1918568Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:727897Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ParalogWBGene00013880Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00018963Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00011679Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00012158Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00013492Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00015360Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00015481Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00018426Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00020757Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionContributes to metalloendopeptidase activity. Involved in proteolysis. Part of mitochondrial processing peptidase complex. Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 2. Is an ortholog of human PMPCA (peptidase, mitochondrial processing subunit alpha).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0080061Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:18667)
Molecular_infoCorresponding_CDSY71G12B.24a
Y71G12B.24b
Corresponding_CDS_historyY71G12B.24:wp236
Corresponding_transcriptY71G12B.24a.1
Y71G12B.24b.1
Other_sequence (52)
Associated_featureWBsf218988
Experimental_infoRNAi_resultWBRNAi00117122Inferred_automaticallyRNAi_primary
WBRNAi00102819Inferred_automaticallyRNAi_primary
WBRNAi00058211Inferred_automaticallyRNAi_primary
Expr_patternExpr1028092
Expr1039763
Expr1161627
Expr2013669
Expr2031903
AntibodyWBAntibody00001110
Microarray_results (16)
Expression_cluster (124)
Interaction (42)
Map_infoMapIPosition-13.0232Error0.046413
PositivePositive_cloneY71G12BInferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00027699
WBPaper00030701
WBPaper00038491
WBPaper00048759
WBPaper00055090
WBPaper00064339
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene