WormBase Tree Display for Gene: WBGene00022007

WBGene00022007 SMap: S_parent: Sequence: Y59H11AM
  Identity: Version: 2
    Name: CGC_name: mpst-6 Person_evidence: WBPerson1852
      Sequence_name: Y59H11AM.3
      Molecular_name: Y59H11AM.3
        Y59H11AM.3.1
        CE25519
      Other_name: Y59H11AM.b Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_Y59H11AM.3 Accession_evidence: NDB BX284604
      Public_name: mpst-6
    DB_info: Database: AceView gene 4J328
        WormFlux gene WBGene00022007
        NDB locus_tag CELE_Y59H11AM.3
        NCBI gene 177661
        RefSeq protein NM_069060.3
        TREEFAM TREEFAM_ID TF315133
        TrEMBL UniProtAcc G5ECA0
        UniProt_GCRP UniProtAcc G5ECA0
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:05 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 03 Mar 2011 11:09:17 WBPerson2970 Name_change: CGC_name: mpst-6
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: mpst
    Allele: WBVar01500079
      WBVar02122464
      WBVar01498996
      WBVar02121213
      WBVar01499396
      WBVar02123086
      WBVar01499633
      WBVar01498928
      WBVar02122609
      WBVar01500245
    RNASeq_FPKM (74)
    GO_annotation: 00126185
    Ortholog (42)
    Paralog: WBGene00008409 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00010380 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00011307 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00017387 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00022006 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00010383 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable sulfurtransferase activity. Is an ortholog of human MPST (mercaptopyruvate sulfurtransferase). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y59H11AM.3
    Corresponding_transcript: Y59H11AM.3.1
    Other_sequence: FD517645.1
      CSC00860_2
      CR11297
      FD517140.1
      CR08836
    Associated_feature: WBsf997242
      WBsf230442
  Experimental_info: RNAi_result: WBRNAi00022563 Inferred_automatically: RNAi_primary
      WBRNAi00057781 Inferred_automatically: RNAi_primary
      WBRNAi00037640 Inferred_automatically: RNAi_primary
      WBRNAi00057782 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1161213
    Drives_construct: WBCnstr00024367
    Construct_product: WBCnstr00024367
    Microarray_results (18)
    Expression_cluster: WBPaper00036738:500uM_Heme_downregulated
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00041071:spe-44_downregulated
      WBPaper00041954:ethanol_upregulated
      WBPaper00045521:Spermatogenic
      WBPaper00045729:gld-2(RNAi)_upregulated
      WBPaper00045774:clk-1_upregulated
      WBPaper00049495:starvation-refeeding_regulated
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00049905:Age_variant_expression
      WBPaper00049942:hsf-1(RNAi)_upregulated
      WBPaper00050686:glp-1(e2141)_downregulated
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
      WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
      WBPaper00053599:female_vs_male_downregulated
      WBPaper00053615:SMO-1_target
      WBPaper00053657:JU2519_M.humicola-infection_24hr
      WBPaper00054872:egl-9(sa307)_downregulated
      WBPaper00055049:S.gordonii_downregulated
      WBPaper00055354:Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Metformin_upregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Psora_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
      WBPaper00055354:Rapamycin-Rifampicin_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rifampicin-Psora_upregulated
      WBPaper00055354:Rifampicin_upregulated
      WBPaper00055482:Tunicamycin_downregulated
      WBPaper00055648:sperm_expressed
      WBPaper00055827:pfd-6(gk493446)_downregulated
      WBPaper00055971:nhl-2(ok818)_20C_downregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056139:soil-microbiota_downregulated
      WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
      WBPaper00059605:mut-16(pk710)_upregulated
      WBPaper00059735:glucose_downregulated_N2
      WBPaper00059739:hira-1(gk835598)_upregulated_L4
      WBPaper00060764:swsn-1(os22ts)_downregulated
      WBPaper00061613:human-alpha-Synuclein(A53T)_downregulated
      WBPaper00061613:human-amyloid-beta_alpha-Synuclein(A53T)_downregulated
      WBPaper00062456:doxycycline_downregulated_CB4856_protein
      WBPaper00062585:hlh-26(ok1453)_downregulated_E.faecium
      WBPaper00064502:nhr-23(kry61);spe-44(fx110)_downregulated
      WBPaper00064502:nhr-23(kry61)_downregulated
      WBPaper00064721:fasn-1(g14)_upregulated_starved
      WBPaper00064769:him-17(me24)_downregulated
      WBPaper00065373:Cisplatin_downregulated_WT
      WBPaper00065373:sek-1(km4)_downregulated_cisplatin
      WBPaper00065984:pals-17(syb3980)_upregulated
      WBPaper00066093:E.coli-purE_upregulated
      WBPaper00066204:CdCl2_downregulated_mRNA
      WBPaper00066232:ash-2(RNAi)_downregulated_WT
      WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
      WBPaper00031703:heme_responsive_8
      WBPaper00034661:AgNPs_upregulated
      WBPaper00035873:dpy-9_regulated
      WBPaper00035873:dpy-10_regulated
      WBPaper00035873:osm-8_regulated
      WBPaper00038172:aak-2overexpression_up_regulated
      WBPaper00040963:Q100_up
      WBPaper00040963:Q200_up
      WBPaper00041002:HF_3d_2.0mM_Down
      WBPaper00041609:hpl-1_hpl-2_upregulated
      WBPaper00042331:a-SWCNTs_downregulated
      WBPaper00045263:0.1mM-paraquat_downregulated
      WBPaper00045263:isp-1(qm150)_downregulated
      WBPaper00045263:nuo-6(qm200)_downregulated
      WBPaper00045263:ProLongevity-mtROS_downregulated
      WBPaper00045673:colistin_downregulated
      WBPaper00046853:AOBr_M.aeruginosa-batch-culture_downregulated
      WBPaper00051387:Triclosan_downregulated
    Interaction: WBInteraction000120577
      WBInteraction000241625
      WBInteraction000285159
      WBInteraction000297768
      WBInteraction000359694
      WBInteraction000367166
      WBInteraction000399721
      WBInteraction000418411
      WBInteraction000551773
  Map_info: Map: IV Position: 3.90388
    Positive: Positive_clone: Y59H11AM Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00040475
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene