Questions, Feedback & Help

Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00021948

expand all nodes | collapse all nodes | view schema

WBGene00021948	SMap	S_parent	Sequence	Y55F3C
	Identity	Version	3
		Name	CGC_name	kvs-5	Person_evidence	WBPerson260
						WBPerson145
			Sequence_name	Y55F3C.3
			Molecular_name (18)
			Other_name	Y55F3C.f	Curator_confirmed	WBPerson1983
					Remark	Old cosmid naming mapped via unique overlapping PCR_product on CDSs
				Y55F3C.e	Curator_confirmed	WBPerson1983
					Remark	Old cosmid naming mapped via unique overlapping PCR_product on CDSs
				CELE_Y55F3C.3	Accession_evidence	NDB	BX284604
			Public_name	kvs-5
		DB_info	Database	AceView	gene	4B505
				WormQTL	gene	WBGene00021948
				WormFlux	gene	WBGene00021948
				NDB	locus_tag	CELE_Y55F3C.3
				Panther	gene	CAEEL\|WormBase=WBGene00021948\|UniProtKB=U4PLR3
					family	PTHR11537
				NCBI	gene	176899
				RefSeq	protein	NM_067577.8
						NM_001307395.4
						NM_001307396.4
						NM_001307394.3
						NM_001307393.3
						NM_001307392.3
				TrEMBL	UniProtAcc	U4PE60
						U4PR20
						U4PBB7
						U4PAX5
						Q95XV8
						U4PLR3
				UniProt_GCRP	UniProtAcc	U4PLR3
				OMIM	gene	600397
		Species	Caenorhabditis elegans
		History	Version_change	1	28 May 2004 13:31:05	WBPerson1971	Event	Imported	Initial conversion from CDS class of stlace from WS125
				2	29 Jul 2011 16:30:08	WBPerson2970	Name_change	CGC_name	kvs-5
				3	04 Sep 2013 14:28:38	WBPerson4025	Event	Acquires_merge	WBGene00043706
			Acquires_merge	WBGene00043706
		Status	Live
	Gene_info	Biotype	SO:0001217
		Gene_class	kvs
		Allele (372)
		Strain	WBStrain00007651
		RNASeq_FPKM (74)
		GO_annotation (22)
		Ortholog	WBGene00032004	Caenorhabditis briggsae	From_analysis	OrthoMCL
						OMA
						Inparanoid_8
						WormBase-Compara
			WBGene00144868	Caenorhabditis brenneri	From_analysis	OMA
						TreeFam
						Inparanoid_8
						WormBase-Compara
			WBGene00068372	Caenorhabditis remanei	From_analysis	OMA
						TreeFam
						Inparanoid_8
						WormBase-Compara
			WBGene00190509	Caenorhabditis brenneri	From_analysis	TreeFam
						WormBase-Compara
			WBGene00080426	Caenorhabditis remanei	From_analysis	TreeFam
						WormBase-Compara
			WBGene00076962	Caenorhabditis remanei	From_analysis	TreeFam
			WBGene00141264	Caenorhabditis brenneri	From_analysis	OMA
						TreeFam
			WBGene00068373	Caenorhabditis remanei	From_analysis	OMA
						TreeFam
			WBGene00101107	Pristionchus pacificus	From_analysis	Inparanoid_8
						WormBase-Compara
			WBGene00159554	Caenorhabditis brenneri	From_analysis	WormBase-Compara
			WBGene00159619	Caenorhabditis brenneri	From_analysis	WormBase-Compara
			CBOVI.g11121	Caenorhabditis bovis	From_analysis	WormBase-Compara
			CSP21.g14780	Caenorhabditis parvicauda	From_analysis	WormBase-Compara
			CSP26.g6468	Caenorhabditis zanzibari	From_analysis	WormBase-Compara
			CSP28.g10764	Caenorhabditis panamensis	From_analysis	WormBase-Compara
			CSP29.g7477	Caenorhabditis becei	From_analysis	WormBase-Compara
			CSP31.g26898	Caenorhabditis uteleia	From_analysis	WormBase-Compara
			CSP32.g16328	Caenorhabditis sulstoni	From_analysis	WormBase-Compara
			CSP38.g8889	Caenorhabditis quiockensis	From_analysis	WormBase-Compara
			CSP39.g12110	Caenorhabditis waitukubuli	From_analysis	WormBase-Compara
			CSP39.g16509	Caenorhabditis waitukubuli	From_analysis	WormBase-Compara
			CSP40.g14031	Caenorhabditis tribulationis	From_analysis	WormBase-Compara
			Cang_2012_03_13_00943.g15054	Caenorhabditis angaria	From_analysis	WormBase-Compara
			Cang_2012_03_13_07277.g20804	Caenorhabditis angaria	From_analysis	WormBase-Compara
			Cni-kvs-5	Caenorhabditis nigoni	From_analysis	WormBase-Compara
			Cnig_chr_IV.g15223	Caenorhabditis nigoni	From_analysis	WormBase-Compara
			Cnig_chr_IV.g15224	Caenorhabditis nigoni	From_analysis	WormBase-Compara
			Csp11.Scaffold629.g8858	Caenorhabditis tropicalis	From_analysis	WormBase-Compara
			Csp5_scaffold_02689.g27560	Caenorhabditis sinica	From_analysis	WormBase-Compara
			FL83_11662	Caenorhabditis latens	From_analysis	WormBase-Compara
			GCK72_015102	Caenorhabditis remanei	From_analysis	WormBase-Compara
			OTIPU.nOt.2.0.1.g09070	Oscheius tipulae	From_analysis	WormBase-Compara
			Pan_g5788	Panagrellus redivivus	From_analysis	WormBase-Compara
			Sp34_40073000	Caenorhabditis inopinata	From_analysis	WormBase-Compara
			chrIV_pilon.g9559	Caenorhabditis elegans	From_analysis	WormBase-Compara
			WBGene00263053	Strongyloides ratti	From_analysis	WormBase-Compara
			ZFIN:ZDB-GENE-090831-3	Danio rerio	From_analysis	Inparanoid
						OrthoFinder
						OrthoInspector
						Panther
						SonicParanoid
			ZFIN:ZDB-GENE-070912-170	Danio rerio	From_analysis	OrthoFinder
						OrthoInspector
						Panther
						SonicParanoid
			ZFIN:ZDB-GENE-100922-109	Danio rerio	From_analysis	Inparanoid
						OMA
						OrthoFinder
						OrthoInspector
						Panther
			ZFIN:ZDB-GENE-091113-38	Danio rerio	From_analysis	OrthoFinder
						Panther
						SonicParanoid
			ZFIN:ZDB-GENE-091117-27	Danio rerio	From_analysis	Inparanoid
						OMA
						OrthoFinder
						OrthoInspector
						Panther
			ZFIN:ZDB-GENE-060526-28	Danio rerio	From_analysis	Inparanoid
						OMA
						OrthoFinder
						OrthoInspector
						Panther
			HGNC:6231	Homo sapiens	From_analysis	OrthoFinder
						OrthoInspector
						Panther
						SonicParanoid
			HGNC:6246	Homo sapiens	From_analysis	Inparanoid
						OrthoFinder
						OrthoInspector
						Panther
						PhylomeDB
			HGNC:6232	Homo sapiens	From_analysis	OrthoFinder
						OrthoInspector
						Panther
						SonicParanoid
			HGNC:18861	Homo sapiens	From_analysis	OMA
						OrthoFinder
						Panther
			MGI:96666	Mus musculus	From_analysis	Inparanoid
						OrthoFinder
						OrthoInspector
						Panther
						SonicParanoid
			MGI:99632	Mus musculus	From_analysis	OrthoFinder
						OrthoInspector
						Panther
						SonicParanoid
			RGD:2954	Rattus norvegicus	From_analysis	Inparanoid
						OrthoFinder
						OrthoInspector
						Panther
						SonicParanoid
			RGD:621264	Rattus norvegicus	From_analysis	OMA
						OrthoFinder
						Panther
			RGD:621349	Rattus norvegicus	From_analysis	OrthoFinder
						OrthoInspector
						Panther
						SonicParanoid
		Paralog (13)
		Structured_description	Automated_description	Predicted to enable delayed rectifier potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Located in plasma membrane. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 26. Is an ortholog of human KCNF1 (potassium voltage-gated channel modifier subfamily F member 1).	Paper_evidence	WBPaper00065943
					Curator_confirmed	WBPerson324
						WBPerson37462
					Inferred_automatically	This description was generated automatically by a script based on data from the WS291 version of WormBase
					Date_last_updated	29 Nov 2023 00:00:00
	Disease_info	Potential_model	DOID:0080461	Homo sapiens	Inferred_automatically	Inferred by orthology to human genes with DO annotation (HGNC:6231)
			DOID:1826	Homo sapiens	Inferred_automatically	Inferred by orthology to human genes with DO annotation (HGNC:6231)
	Molecular_info	Corresponding_CDS	Y55F3C.3a
			Y55F3C.3c
			Y55F3C.3d
			Y55F3C.3e
			Y55F3C.3f
			Y55F3C.3g
		Corresponding_CDS_history	Y55F3C.3:wp175
			Y55F3C.3b:wp274
		Corresponding_transcript	Y55F3C.3a.1
			Y55F3C.3c.1
			Y55F3C.3d.1
			Y55F3C.3e.1
			Y55F3C.3f.1
			Y55F3C.3g.1
		Other_sequence (19)
		Associated_feature (27)
	Experimental_info	RNAi_result	WBRNAi00021056	Inferred_automatically	RNAi_primary
			WBRNAi00002374	Inferred_automatically	RNAi_primary
			WBRNAi00057555	Inferred_automatically	RNAi_primary
			WBRNAi00021057	Inferred_automatically	RNAi_primary
		Expr_pattern	Expr9462
			Expr1016026
			Expr1017500
			Expr1039655
			Expr1160988
			Expr1160989
			Expr2012988
			Expr2031220
		Drives_construct	WBCnstr00024396
		Construct_product	WBCnstr00014027
			WBCnstr00024396
		Microarray_results (44)
		Expression_cluster (195)
		Interaction	WBInteraction000112836
			WBInteraction000112839
			WBInteraction000112840
			WBInteraction000162561
			WBInteraction000167519
			WBInteraction000170122
			WBInteraction000293558
			WBInteraction000469834
			WBInteraction000472696
	Map_info	Map	IV	Position	-23.571	Error	0.008513
		Positive	Positive_clone	Y55F3C	Inferred_automatically	From sequence, transcript, pseudogene data
		Pseudo_map_position
	Reference	WBPaper00038444
		WBPaper00038491
		WBPaper00055090
		WBPaper00064898
		WBPaper00065331
	Remark	Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.	CGC_data_submission
	Method	Gene