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WormBase Tree Display for Gene: WBGene00021902

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Name Class

WBGene00021902SMapS_parentSequenceY54H5A
IdentityVersion2
NameCGC_nameoxy-4Paper_evidenceWBPaper00033040
Person_evidenceWBPerson264
Sequence_nameY54H5A.4
Molecular_nameY54H5A.4
Y54H5A.4.1
CE29883
Other_nameCELE_Y54H5A.4Accession_evidenceNDBBX284603
Public_nameoxy-4
DB_infoDatabaseAceViewgene3G244
3G246
WormQTLgeneWBGene00021902
WormFluxgeneWBGene00021902
NDBlocus_tagCELE_Y54H5A.4
PanthergeneCAEEL|WormBase=WBGene00021902|UniProtKB=Q9N392
familyPTHR11615
NCBIgene175702
RefSeqproteinNM_065691.8
SwissProtUniProtAccQ9N392
TREEFAMTREEFAM_IDTF106273
UniProt_GCRPUniProtAccQ9N392
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:05WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
221 Apr 2009 16:04:55WBPerson9133Name_changeCGC_nameoxy-4
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classoxy
Allele (37)
RNASeq_FPKM (74)
GO_annotation00093617
00093618
00093619
00093620
00093621
00093622
Contained_in_operonCEOP3260
Ortholog (43)
ParalogWBGene00021562Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable 4 iron, 4 sulfur cluster binding activity and metal ion binding activity. Predicted to be involved in iron-sulfur cluster assembly. Predicted to be part of CIA complex. Is an ortholog of human CIAO3 (cytosolic iron-sulfur assembly component 3).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY54H5A.4
Corresponding_CDS_historyY54H5A.4:wp100
Y54H5A.4:wp104
Corresponding_transcriptY54H5A.4.1
Other_sequence (30)
Associated_featureWBsf666890
WBsf666891
WBsf226640
Experimental_infoRNAi_resultWBRNAi00033620Inferred_automaticallyRNAi_primary
WBRNAi00057483Inferred_automaticallyRNAi_primary
WBRNAi00057492Inferred_automaticallyRNAi_primary
WBRNAi00007085Inferred_automaticallyRNAi_primary
WBRNAi00057482Inferred_automaticallyRNAi_primary
WBRNAi00078165Inferred_automaticallyRNAi_primary
Expr_patternExpr1017419
Expr1039619
Expr1160930
Expr2014671
Expr2032904
Drives_constructWBCnstr00024407
Construct_productWBCnstr00024407
Microarray_results (14)
Expression_clusterWBPaper00031040:TGF-beta_adult_downregulated
WBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:bodywall-muscle_larva_enriched
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00041370:spg-7(RNAi)_upregulated_atfs-1_dependent
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00045521:Gender_Neutral
WBPaper00045729:gld-2(RNAi)_upregulated
WBPaper00048988:neuron_expressed
WBPaper00049920:Glucose-Diet_downregulated_hyl-2(tm2031)
WBPaper00050234:lin-28(RNAi)_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050990:body-muscle_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00051039:germline_enriched
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053321:PGCs_enriched_NuGen
WBPaper00053599:oocyte_vs_mitosis_upregulated
WBPaper00055648:germline_expressed
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00056326:zip-3(gk3164)_upregulated_P.aeruginosa-infected
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058691:cfp-1(tm6369)_downregulated
WBPaper00058691:sin-3(tm1276)_downregulated
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061439:unc-30(ok613)_downregulated
WBPaper00061527:Y32B12B.2-F28C1.1
WBPaper00062056:lin-37(n758)_upregulated
WBPaper00062193:hsf-1(RNAi)_downregulated
WBPaper00062193:skn-1(RNAi)_downregulated
WBPaper00064005:starvation_upregulated_N2_protein
WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064107:lin-35(n745)_upregulated
WBPaper00064716:paraquat_upregulated
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066062:xrep-4(lax137)_upregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00031003:hlh_1_enriched
WBPaper00035905:FBF-1_Associated
WBPaper00036286:Pattern_H
WBPaper00040858:eQTL_regulated_old
WBPaper00040963:TA200_up
WBPaper00040963:TA300_up
WBPaper00041370:spg-7(RNAi)_upregulated
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00045960:L1-L4-lethargus_downregulated
WBPaper00045960:L4-lethargus_downregulated
InteractionWBInteraction000118365
WBInteraction000186156
WBInteraction000195512
WBInteraction000460979
WBInteraction000547735
WBInteraction000576337
WBProcessWBbiopr:00000001
WBbiopr:00000065
Map_infoMapIIIPosition-2.05115Error0.001553
PositivePositive_cloneY54H5AInferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00033040
WBPaper00038491
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene