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WormBase Tree Display for Gene: WBGene00021900

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Name Class

WBGene00021900SMapS_parentSequenceCHROMOSOME_III
IdentityVersion1
NameSequence_nameY54H5A.2
Molecular_nameY54H5A.2
Y54H5A.2.1
CE32024
Other_nameCELE_Y54H5A.2Accession_evidenceNDBBX284603
Public_nameY54H5A.2
DB_infoDatabaseAceViewgene3G228
WormQTLgeneWBGene00021900
WormFluxgeneWBGene00021900
NDBlocus_tagCELE_Y54H5A.2
PanthergeneCAEEL|WormBase=WBGene00021900|UniProtKB=Q9BL64
familyPTHR13387
NCBIgene175699
RefSeqproteinNM_065688.7
TREEFAMTREEFAM_IDTF313296
TrEMBLUniProtAccQ9BL64
UniProt_GCRPUniProtAccQ9BL64
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:05WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (151)
RNASeq_FPKM (74)
Contained_in_operonCEOP3259
Ortholog (35)
Structured_descriptionAutomated_descriptionEnriched in several structures, including ABarppaapp; GLR; germ line; lateral ganglion; and pharyngeal cell based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; gld-1; and sir-2.1 based on microarray; RNA-seq; and proteomic studies. Is affected by thirteen chemicals including bisphenol S; stavudine; and Zidovudine based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Protein HGH1 N-terminal; Armadillo-type fold; Protein Hgh1; Domain of unknown function (DUF384); Armadillo-like helical; Protein HGH1 C-terminal; Domain of unknown function (DUF383); and Phosphorylation site. Is an ortholog of human HGH1 (HGH1 homolog).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY54H5A.2
Corresponding_CDS_historyY54H5A.2:wp86
Corresponding_transcriptY54H5A.2.1
Other_sequence (24)
Associated_feature (36)
Experimental_infoRNAi_resultWBRNAi00037504Inferred_automaticallyRNAi_primary
WBRNAi00008676Inferred_automaticallyRNAi_primary
WBRNAi00057489Inferred_automaticallyRNAi_primary
WBRNAi00007073Inferred_automaticallyRNAi_primary
WBRNAi00057488Inferred_automaticallyRNAi_primary
WBRNAi00095803Inferred_automaticallyRNAi_primary
WBRNAi00070199Inferred_automaticallyRNAi_primary
WBRNAi00057486Inferred_automaticallyRNAi_primary
WBRNAi00085872Inferred_automaticallyRNAi_primary
WBRNAi00057487Inferred_automaticallyRNAi_primary
Expr_patternExpr1025778
Expr1039617
Expr1160928
Expr2007964
Expr2026206
Drives_constructWBCnstr00024409
Construct_productWBCnstr00024409
Microarray_results (21)
Expression_clusterWBPaper00031040:TGF-beta_adult_downregulated
WBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:bodywall-muscle_larva_enriched
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00045521:Gender_Neutral
WBPaper00045571:germline-ablation_downregulated
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
WBPaper00048923:Aging_regulated
WBPaper00048988:neuron_expressed
WBPaper00049954:BPS_downregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00050990:seam_expressed
WBPaper00051039:germline_enriched
WBPaper00051245:body-wall-muscle_cytoplasm_expressed
WBPaper00051245:epidermis_cytoplasm_expressed
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00051245:intestine_nucleus_expressed
WBPaper00051245:pharyngeal-muscle_cytoplasm_expressed
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
WBPaper00053388:dauer_regulated_Cluster2
WBPaper00053599:oocyte_vs_mitosis_upregulated
WBPaper00053810:daf-2(e1370)_downregulated
WBPaper00053810:nuo-6(qm200)_downregulated
WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
WBPaper00055354:Rapamycin-Rifampicin_upregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055354:Rifampicin-Psora_upregulated
WBPaper00055354:Rifampicin_upregulated
WBPaper00055648:germline_expressed
WBPaper00056826:SGP_biased
WBPaper00057136:yap-1(ys38)_upregulated
WBPaper00058691:sin-3(tm1276)_downregulated
WBPaper00058725:sftb-1(cer6)_upregulated
WBPaper00060100:SiNP_downregulated_mRNA
WBPaper00061274:hypergravity_15xg_downregulated
WBPaper00061340:AVA
WBPaper00061340:AVH
WBPaper00061340:GLR
WBPaper00061340:Neuroblast_ALM_BDU
WBPaper00061340:pm1_pm2
WBPaper00061340:pm3_pm4_pm5
WBPaper00061341:28C_24h_downregulated
WBPaper00061341:28C_48h_downregulated
WBPaper00061479:HDA-1_interacting_protein
WBPaper00061527:B0511.6_180-Y54E10BR.4_1509
WBPaper00061527:F45H10.2-R53.4_21676
WBPaper00061651:I6_enriched
WBPaper00062325:etr-1(lq61)_downregulated
WBPaper00062554:MAGU-2_interacting
WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA
WBPaper00064005:starvation_upregulated_N2_mRNA
WBPaper00064071:NHR-49_interacting
WBPaper00064163:ZNFX-1_interacting_embryo
WBPaper00064201:SNA-3_interacting
WBPaper00064716:paraquat_upregulated
WBPaper00065373:Cisplatin_downregulated_WT
WBPaper00065841:28_0
WBPaper00065841:129_0
WBPaper00065841:135_0
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
WBPaper00025141:N2_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00031003:24hr_muscle_depleted
WBPaper00031003:total_muscle_depleted
WBPaper00031532:Larva_Pan_Neuronal_Enriched
WBPaper00032948:StarveUp4
WBPaper00036123:Atrazine_regulated
WBPaper00036123:Cadmium_regulated
WBPaper00036286:Pattern_H
WBPaper00037113:Diazinon_16C_regulated
WBPaper00037901:GLD-1_mRNA_targets
WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
WBPaper00040963:Q200_up
WBPaper00041606:CE_B.thuringiensis-DB27_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_24h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
WBPaper00042274:tbx-2(bx59)_upregulated
WBPaper00045263:nuo-6(qm200)_downregulated
WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
[cgc5767]:expression_class_E
[cgc5767]:expression_class_ET
[cgc5767]:expression_class_ET_max(83_min)
[cgc5767]:expression_class_E_pi(23_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_ME
[cgc5767]:expression_class_MET
[cgc6390]:oogenesis-enriched
InteractionWBInteraction000041552
WBInteraction000042301
WBInteraction000045188
WBInteraction000325345
WBInteraction000548744
WBInteraction000574986
WBInteraction000579679
WBInteraction000583540
WBInteraction000585021
WBInteraction000586789
WBProcessWBbiopr:00000065
Map_infoPositivePositive_cloneY54H5AInferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIII-2.0716
ReferenceWBPaper00033040
WBPaper00038491
WBPaper00055090
MethodGene