WormBase Tree Display for Gene: WBGene00021677
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| WBGene00021677 | SMap | S_parent | Sequence | Y48G1C | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | pgs-1 | Person_evidence | WBPerson8897 | |||||
| Sequence_name | Y48G1C.4 | ||||||||
| Molecular_name | Y48G1C.4a | ||||||||
| Y48G1C.4a.1 | |||||||||
| CE30021 | |||||||||
| Y48G1C.4b | |||||||||
| CE49150 | |||||||||
| Y48G1C.4b.1 | |||||||||
| Other_name | Y48G1C.e | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y48G1C.4 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | pgs-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 24 Feb 2009 16:52:14 | WBPerson2970 | Name_change | CGC_name | pgs-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pgs | ||||||||
| Allele (66) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (22) | |||||||||
| Contained_in_operon | CEOP1971 | ||||||||
| Ortholog (34) | |||||||||
| Structured_description | Concise_description | pgs-1 encodes a phosphatidylglycerophosphate (PGP) synthase; by homology, PGS-1 is predicted to catalyze the formation of phosphatidylglycerophosphate from cytidinediphosphate-diacylglycerol and glycerol 3-phosphate; in C. elegans, pgs-1 activity is required for normal germ cell mitochondrial membrane potential and cristae morphology, as well as for germ cell proliferation. | Paper_evidence | WBPaper00040537 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 21 Dec 2011 00:00:00 | ||||||||
| Automated_description | Predicted to enable CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity. Involved in regulation of cell population proliferation and regulation of mitochondrial membrane potential. Predicted to be located in mitochondrion. Is an ortholog of human PGS1 (phosphatidylglycerophosphate synthase 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y48G1C.4a | |||||||
| Y48G1C.4b | |||||||||
| Corresponding_transcript | Y48G1C.4a.1 | ||||||||
| Y48G1C.4b.1 | |||||||||
| Other_sequence (24) | |||||||||
| Associated_feature | WBsf982380 | ||||||||
| WBsf982381 | |||||||||
| WBsf1009017 | |||||||||
| WBsf1009018 | |||||||||
| WBsf217088 | |||||||||
| WBsf217089 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00117105 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00056954 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001662 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1011881 | ||||||||
| Expr1039492 | |||||||||
| Expr1160403 | |||||||||
| Expr2014878 | |||||||||
| Expr2033113 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (86) | |||||||||
| SAGE_tag | SAGE:aaattatacatttttga | Strand | Sense | ||||||
| Unambiguously_mapped | |||||||||
| SAGE:gctgcacttcaacaacc | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:gctgcacttc | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:aaatgtccattcttctc | Strand | Antisense | |||||||
| SAGE:tctgctgacacgtggat | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:caaaaggtct | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:caaaaggtctttgggca | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:tcaagtatcg | Strand | Antisense | |||||||
| SAGE:caattcgacg | Strand | Antisense | |||||||
| SAGE:aaatgtccat | Strand | Antisense | |||||||
| Interaction (38) | |||||||||
| Map_info | Map | I | Position | -20.8729 | Error | 0.193958 | |||
| Positive | Positive_clone | Y48G1C | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00034409 | ||||||||
| WBPaper00036609 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00040537 | |||||||||
| WBPaper00042257 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00056678 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
