Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00021671

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00021671SMapS_parentSequenceY48G1BM
IdentityVersion3
NameSequence_nameY48G1BM.6
Molecular_nameY48G1BM.6a
Y48G1BM.6a.1
CE54310
Y48G1BM.6d
Other_nameCELE_Y48G1BM.6Accession_evidenceNDBBX284601
Public_nameY48G1BM.6
DB_infoDatabaseAceViewgene1A708
WormQTLgeneWBGene00021671
WormFluxgeneWBGene00021671
NDBlocus_tagCELE_Y48G1BM.6
NCBIgene190039
RefSeqproteinNR_175829.1
NM_001393046.1
RNAcentralURSidURS000242F08F
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:04WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
209 Jan 2009 16:50:33WBPerson1849EventAcquires_mergeWBGene00021670
310 Nov 2020 23:53:02WBPerson51134EventSplit_intoWBGene00306121
Acquires_mergeWBGene00021670
Split_intoWBGene00306121
StatusLive
Gene_infoBiotypeSO:0001217
Allele (67)
RNASeq_FPKM (74)
Ortholog (11)
Paralog (20)
Structured_descriptionAutomated_descriptionEnriched in neurons and retrovesicular ganglion based on RNA-seq and microarray studies. Is affected by several genes including daf-16; daf-2; and hsf-1 based on tiling array; microarray; and RNA-seq studies. Is affected by nine chemicals including multi-walled carbon nanotube; Alovudine; and metformin based on RNA-seq studies.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY48G1BM.6a
Corresponding_CDS_historyY48G1BM.6:wp199
Y48G1BM.6:wp214
Y48G1BM.6:wp265
Corresponding_transcriptY48G1BM.6d
Y48G1BM.6a.1
Corresponding_pseudogene_historyY48G1BM.6:wp279
Associated_feature (11)
Experimental_infoRNAi_resultWBRNAi00055472Inferred_automaticallyRNAi_primary
WBRNAi00056947Inferred_automaticallyRNAi_primary
WBRNAi00056946Inferred_automaticallyRNAi_primary
WBRNAi00058283Inferred_automaticallyRNAi_primary
WBRNAi00019988Inferred_automaticallyRNAi_primary
Expr_patternExpr1013491
Expr1039488
Expr1160392
Expr2007682
Expr2025924
Microarray_results (16)
Expression_clusterWBPaper00032528:L3_depleted
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00040560:hpl-2_L3_upregulated
WBPaper00042194:nhr-114(RNAi)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00045050:csr-1(hypomorph)_downregulated
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045521:Spermatogenic
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
WBPaper00046805:csr-1(RNAi)_downregulated_Set1
WBPaper00046805:csr-1(RNAi)_downregulated_Set2
WBPaper00048971:daf-16(mgDf50)_downregulated_L1
WBPaper00048988:neuron_expressed
WBPaper00049098:hrde-1(tm1200)-induced_15C
WBPaper00049098:hrde-1(tm1200)-induced_23C
WBPaper00049098:hrde-1(tm1200)-induced_p15C
WBPaper00049377:MWCNT_upregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
WBPaper00049942:HeatShock_upregulated_hsf-1(RNAi)
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050080:rbr-2(tm3141)_downregulated
WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_24-cell-embryo
WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_100-cell-embryo
WBPaper00050193:lsm-1(tm3585)_upregulated_L3
WBPaper00050193:met-2(n4256)set-25(n5021)_upregulated_L1
WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:daf-2(e1370)_vs_daf-2(e1370);mir-34(gk437)_regulated_dauer_25C
WBPaper00050743:elli-1(sam-3)_downregulated
WBPaper00050801:DAF-16_dauer_regulome
WBPaper00050801:DPY-21_dauer_regulome
WBPaper00050990:intestine_expressed
WBPaper00051265:F1_hrde-1(tm1200)_upregulated
WBPaper00051265:F4_hrde-1(tm1200)_upregulated
WBPaper00051265:F4_morc-1(tm6048)_upregulated
WBPaper00051404:alg-1(gk214)_upregulated
WBPaper00052885:hrde-1(tm1200)-emb-4(qm31)_regulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053295:lin-22(icb38)_upregulated
WBPaper00053295:lin-22(ot267)_upregulated
WBPaper00053295:lin-22(ot269)_upregulated
WBPaper00053302:alovudine_72h_regulated
WBPaper00053308:SMG-2_associated_NMD(-)_upregulated_ClassI
WBPaper00053321:embryo-to-L1_upregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
WBPaper00053599:oocyte_vs_mitosis_upregulated
WBPaper00053810:clk-1(qm30)_upregulated
WBPaper00053810:daf-2(e1370)_upregulated
WBPaper00053810:isp-1(qm150)_upregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00054493:hpl-2(tm1489)_downregulated
WBPaper00055137:S.maltophilia_upregulated
WBPaper00055334:DLC-1_interacting
WBPaper00055354:eat-2(ad1116)_downregulated
WBPaper00055354:Rapamycin-Metformin_upregulated
WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin_upregulated
WBPaper00055354:Rifampicin-Psora_upregulated
WBPaper00055386:daf-2(e1370)_downregulated
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00055941:atfs-1(et15)_upregulated
WBPaper00055941:hif-1(ia4)_upregulated
WBPaper00055941:nuo-6(qm200)_upregulated
WBPaper00056034:pals-22(jy3)_downregulated
WBPaper00056284:ints-9(RNAi)_upregulated
WBPaper00056290:hsp-6(mg585)_upregulated
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056446:hsb-1(cg116)_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056809:smn-1(ok355)_upregulated
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00057162:meg-3_meg-4_downregulated_sRNA
WBPaper00058711:paraquat_downregulated
WBPaper00058942:henn-1(pk2295)_upregulated
WBPaper00059117:B.subtilis_downregulated
WBPaper00059421:daf-1(m40);daf-3(mgDf90)_upregulated
WBPaper00059605:mut-16(pk710)_upregulated
WBPaper00059605:simr-1(cmp36)_downregulated
WBPaper00059739:hira-1(gk835598)_upregulated_L1
WBPaper00060014:set-2(zr2012)_upregulated
WBPaper00060445:ikb-1(nr2027)_upregulated_L4
WBPaper00060445:nfki-1(cer1)_upregulated_L4
WBPaper00060526:plp-1(ok2155)_upregulated
WBPaper00060661:sensory-neuron_enriched
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060909:atfs-1(et18)_upregulated
WBPaper00061341:28C_48h_upregulated
WBPaper00061439:unc-30(ok613)_downregulated
WBPaper00061995:mter-4(syb3662syb3403)_upregulated
WBPaper00062056:met-2(n4256)_upregulated
WBPaper00062118:neural-HSF-1_downregulated
WBPaper00062156:jmjd-5(zr1234)_downregulated_germline
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062440:crh-1(n3315)_upregulated
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064156:lbp-3(overexpress)_upregulated
WBPaper00064315:mes-4(bn73)_upregulated_EGCs
WBPaper00064473:ets-4(rrr16)_upregulated
WBPaper00064539:nhr-114(gk849)_upregulated
WBPaper00064637:cox-5B(RNAi)_upregulated
WBPaper00064716:paraquat_upregulated
WBPaper00065005:sams-3(RNAi)_upregulated
WBPaper00065005:sams-4(RNAi)_upregulated
WBPaper00065096:25C_vs_20C_upregulated
WBPaper00065096:npr-8(ok1439)_upregulated_Day10_20C
WBPaper00065096:npr-8(ok1439)_upregulated_Day10_25C
WBPaper00065158:AFD_enriched
WBPaper00065734:unc-25(e156)_upregulated
WBPaper00065749:Heat-Shock_upregulated_endu-2(tm4977)
WBPaper00065749:Heat-Shock_upregulated_N2
WBPaper00065841:11_0
WBPaper00065841:13_1
WBPaper00065841:31_0
WBPaper00065841:43_0
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Enriched_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00027111:rde-3(ne298)_upregulated
WBPaper00030839:Embryo_A_Class
WBPaper00030839:Embryo_Pan_Neuronal
WBPaper00031003:0hr_muscle_depleted
WBPaper00031003:24hr_muscle_depleted
WBPaper00031003:total_muscle_depleted
WBPaper00035227:heat_shock_regulated
WBPaper00035588:alg-1(-)_upregulated
WBPaper00036286:Pattern_F
WBPaper00036286:Pattern_H
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00041174:genotypic
WBPaper00041174:genotypic_prime
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00042234:xpa-1_upregulated
WBPaper00045263:isp-1(qm150)_upregulated
WBPaper00045263:nuo-6(qm200)_upregulated
InteractionWBInteraction000373465
WBInteraction000373467
WBInteraction000373469
Map_infoPositivePositive_cloneY48G1BMInferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionI-19.1182
Remark[2020-11-10T23:53:02.969Z WBPerson51134] Gene Split creating Y48G1BM.10 WBGene00306121: Seems to be a fusion of CDS Y48G1BM.6 and CDS Y48G1BM.10Curator_confirmedWBPerson51134
[2020-11-10T23:54:39.038Z WBPerson51134] Gene Updated: Biotype changed to CDSCurator_confirmedWBPerson51134
MethodGene