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WormBase Tree Display for Gene: WBGene00021537

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Name Class

WBGene00021537SMapS_parentSequenceCHROMOSOME_IV
IdentityVersion1
NameSequence_nameY42H9AR.2
Molecular_nameY42H9AR.2
Y42H9AR.2.1
CE44588
Other_nameY42H9AR.eCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
CELE_Y42H9AR.2Accession_evidenceNDBBX284604
Public_nameY42H9AR.2
DB_infoDatabaseAceViewgene4I867
4I863
WormQTLgeneWBGene00021537
WormFluxgeneWBGene00021537
NDBlocus_tagCELE_Y42H9AR.2
PanthergeneCAEEL|WormBase=WBGene00021537|UniProtKB=Q9N3Y5
familyPTHR23291
NCBIgene189842
RefSeqproteinNM_068949.5
TREEFAMTREEFAM_IDTF319996
TrEMBLUniProtAccQ9N3Y5
UniProt_GCRPUniProtAccQ9N3Y5
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:04WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (28)
RNASeq_FPKM (74)
GO_annotation00094088
00094089
00094090
00094091
00094092
00094093
Ortholog (45)
ParalogWBGene00006470Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00006479Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00009580Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00019664Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be involved in negative regulation of apoptotic signaling pathway. Predicted to be located in Golgi apparatus; endoplasmic reticulum; and membrane. Is an ortholog of human GRINA (glutamate ionotropic receptor NMDA type subunit associated protein 1) and TMBIM1 (transmembrane BAX inhibitor motif containing 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY42H9AR.2
Corresponding_CDS_historyY42H9AR.2:wp147
Y42H9AR.2:wp210
Y42H9AR.2:wp212
Corresponding_transcriptY42H9AR.2.1
Other_sequenceTcol_isotig21491
Tcir_isotig28796
Associated_featureWBsf997135
WBsf997136
WBsf997137
WBsf228623
Experimental_infoRNAi_resultWBRNAi00037027Inferred_automaticallyRNAi_primary
WBRNAi00056443Inferred_automaticallyRNAi_primary
WBRNAi00056442Inferred_automaticallyRNAi_primary
Expr_patternExpr1019491
Expr1159919
Expr2007467
Expr2025704
Drives_constructWBCnstr00024512
Construct_productWBCnstr00024512
Microarray_results (16)
Expression_clusterWBPaper00032528:L3_depleted
WBPaper00038438:P.lumniescens_24hr_downregulated_TilingArray
WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
WBPaper00040209:B.thuringiensis_upregulated_MY18
WBPaper00041071:spe-44_downregulated
WBPaper00042194:nhr-114(RNAi)_upregulated
WBPaper00044037:eat-2_regulated_nhr-62_dependent
WBPaper00044037:eat-2_upregulated
WBPaper00044736:rising_dev_expression
WBPaper00045316:prg-1_downregulated_L4
WBPaper00045390:tunicamycin_upregulated
WBPaper00045521:Spermatogenic
WBPaper00045809:rsd-2(yp10)_downregulated
WBPaper00046805:csr-1(RNAi)_upregulated_Set1
WBPaper00046805:P-granule-RNAi_upregulated_Set1
WBPaper00048690:hermaphrodite-Z1-Z4-daughter_enriched
WBPaper00048690:hermaphrodite-Z1-Z4_enriched
WBPaper00048690:male-Z1-Z4_enriched
WBPaper00048923:Aging_regulated
WBPaper00049489:AMsh-glia_enriched
WBPaper00049920:Glucose-Diet_upregulated_hyl-2(tm2031)
WBPaper00049920:Glucose-Diet_upregulated_N2
WBPaper00049942:HeatShock_downregulated_hsf-1(RNAi)
WBPaper00049942:hsf-1(RNAi)_downregulated
WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_24-cell-embryo
WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_100-cell-embryo
WBPaper00050163:let-418(RNAi)_upregulated_100-cell-embryo
WBPaper00050231:male_enriched
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00051404:alg-2(ok304)_downregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053318:Aging_downregulated_mRNA_N2
WBPaper00053318:mir-71(n4115)_downregulated_mRNA
WBPaper00053599:female_vs_male_downregulated
WBPaper00053810:isp-1(qm150)_downregulated
WBPaper00054872:egl-9(sa307)_downregulated
WBPaper00055226:ADR-2_target_N2
WBPaper00055354:Rapamycin-Metformin_upregulated
WBPaper00055386:daf-2(e1370)_upregulated
WBPaper00055386:eat-2(ad465)_upregulated
WBPaper00055648:sperm_expressed
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056161:male_enriched_siRNA
WBPaper00056284:ints-9(RNAi)_upregulated
WBPaper00056290:hsp-6(mg585)_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056809:smn-1(ok355)_downregulated
WBPaper00057068:numr-1(RNAi)_upregulated_Cadmium
WBPaper00058955:heatshock_upregulated_CE
WBPaper00059117:B.subtilis_upregulated
WBPaper00059605:mut-16(pk710)_upregulated
WBPaper00060445:nfki-1(cer1)_ikb-1(nr2027)_upregulated_L4
WBPaper00060445:nfki-1(cer1)_upregulated_L4
WBPaper00060683:hlh-11(ko1)_upregulated
WBPaper00060909:atfs-1(cmh15)_upregulated
WBPaper00061340:AFD
WBPaper00061340:Excretory_duct_and_pore
WBPaper00061340:Neuroblast_ALA_RMED
WBPaper00061340:Neuroblast_AVG_RIR
WBPaper00061340:RID_parent
WBPaper00061424:Diet_MYb120_upregulated
WBPaper00061424:Diet_MYb131_upregulated
WBPaper00061439:unc-30(ok613)_downregulated
WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
WBPaper00061527:Y40H4A.2-ZK1053.2
WBPaper00062078:NMR-HspB1_regulated
WBPaper00062156:jmjd-5(zr1234)_upregulated
WBPaper00062193:skn-1(RNAi)_downregulated
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064502:spe-44(fx110)_downregulated
WBPaper00064539:nhr-114(gk849)_downregulated
WBPaper00064716:paraquat_downregulated
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065096:npr-8(ok1439)_upregulated_Day10_20C
WBPaper00065096:npr-8(ok1439)_upregulated_Day10_25C
WBPaper00065841:35_3
WBPaper00065984:pals-17(syb3980)_upregulated
WBPaper00066085:hda-3(ok1991)_upregulated
WBPaper00066110:Cisplatin_upregulated_diploid
WBPaper00066110:Doxorubicin_upregulated_diploid
WBPaper00066110:tetraploid_vs_diploid_upregulated
WBPaper00066232:ash-2(RNAi)_downregulated_WT
WBPaper00035560:ahr-1_upregulated
WBPaper00035873:dpy-9_regulated
WBPaper00035891:zip-2(RNAi)_downregulated
WBPaper00036286:Pattern_E
WBPaper00038172:aak-2overexpression_up_regulated
WBPaper00038172:tax-6null_down_regulated
WBPaper00040210:Diazinon_24C_regulated
WBPaper00040963:Q200_up
WBPaper00041002:HF_3d_0.2mM_Up
WBPaper00041002:HF_3d_2.0mM_Down
WBPaper00041174:environmental
WBPaper00041174:genotypic
WBPaper00041174:genotypic_and_environmental
WBPaper00042258:DA1877_upregulated_GravidAdult
WBPaper00042274:tbx-2(bx59)_downregulated
WBPaper00045263:0.1mM-paraquat_downregulated
WBPaper00045263:isp-1(qm150)_downregulated
WBPaper00045263:nuo-6(qm200)_downregulated
WBPaper00045263:ProLongevity-mtROS_downregulated
WBPaper00045673:colistin_downregulated
Interaction (19)
Map_infoPositivePositive_cloneY42H9ARInferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIV3.6011
ReferenceWBPaper00038491
WBPaper00055090
MethodGene