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WormBase Tree Display for Gene: WBGene00021517

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Name Class

WBGene00021517SMapS_parentSequenceY41D4B
IdentityVersion1
NameSequence_nameY41D4B.15
Molecular_nameY41D4B.15
Y41D4B.15.1
CE46665
Other_nameCELE_Y41D4B.15Accession_evidenceNDBBX284604
Public_nameY41D4B.15
DB_infoDatabaseAceViewgene4C329
WormQTLgeneWBGene00021517
WormFluxgeneWBGene00021517
NDBlocus_tagCELE_Y41D4B.15
PanthergeneCAEEL|WormBase=WBGene00021517|UniProtKB=Q95Y16
familyPTHR21733
NCBIgene189822
RefSeqproteinNM_067700.4
TREEFAMTREEFAM_IDTF315857
TrEMBLUniProtAccQ95Y16
UniProt_GCRPUniProtAccQ95Y16
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:04WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (94)
RNASeq_FPKM (74)
OrthologWBGene00078934Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
CBOVI.g7155Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP28.g17378Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g21748Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP38.g15564Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g15565Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g4399Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
GCK72_016342Caenorhabditis remaneiFrom_analysisWormBase-Compara
Sp34_40055400Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g9700Caenorhabditis elegansFrom_analysisWormBase-Compara
Paralog (21)
Structured_descriptionAutomated_descriptionEnriched in Z1.p; Z4.a; intestine; male distal tip cell; and mechanosensory neurons based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by fifteen chemicals including tryptophan; Tunicamycin; and multi-walled carbon nanotube based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domain: Transmembrane glycoprotein.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY41D4B.15
Corresponding_CDS_historyY41D4B.15:wp88
Y41D4B.15:wp202
Y41D4B.15:wp228
Corresponding_transcriptY41D4B.15.1
Experimental_infoRNAi_resultWBRNAi00020495Inferred_automaticallyRNAi_primary
WBRNAi00089363Inferred_automaticallyRNAi_primary
WBRNAi00088693Inferred_automaticallyRNAi_primary
WBRNAi00088586Inferred_automaticallyRNAi_primary
WBRNAi00056383Inferred_automaticallyRNAi_primary
WBRNAi00020494Inferred_automaticallyRNAi_primary
WBRNAi00095231Inferred_automaticallyRNAi_primary
Expr_patternExpr1020028
Expr1159869
Expr2007443
Expr2025679
Microarray_results (19)
Expression_clusterWBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:intestine_larva_enriched
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038168:lin-15B(n744)_upregulated
WBPaper00038438:D.coniospora_12hr_upregulated_RNAseq
WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
WBPaper00042194:Tryptophan_upregulated
WBPaper00042215:wdr-23(tm1817)_upregulated
WBPaper00042561:smg-2(RNAi)_upregulated
WBPaper00042561:smgl-1(RNAi)_upregulated
WBPaper00044030:nhr-8(hd117)_upregulated
WBPaper00045390:tunicamycin_upregulated
WBPaper00048690:male-Z1-Z4-daughter_enriched
WBPaper00049377:MWCNT_downregulated
WBPaper00050096:P.aeruginosa_upregulated
WBPaper00050504:hrp-2(RNAi)_upregulated
WBPaper00050990:intestine_enriched
WBPaper00050990:intestine_expressed
WBPaper00051558:aging_regulated
WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
WBPaper00053318:Aging_upregulated_mRNA_N2
WBPaper00053318:mir-71(n4115)_upregulated_mRNA
WBPaper00053402:his-3(RNAi)_upregulated
WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
WBPaper00053771:up_at_3h-NaCl
WBPaper00053771:up_at_24h-NaCl
WBPaper00053810:daf-2(e1370)_upregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00053888:drh-3(rrr2)_upregulated
WBPaper00055013:hmg-3(bar24)_upregulated
WBPaper00055013:spt-16(RNAi)_upregulated
WBPaper00055334:DLC-1_interacting
WBPaper00055354:Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
WBPaper00055354:Rapamycin-Rifampicin_upregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055354:Rifampicin-Psora_upregulated
WBPaper00055482:pmt-2(RNAi)_upregulated
WBPaper00056167:Cry5B_downregulated
WBPaper00056167:ifo-1(kc2)_downregulated
WBPaper00056275:P.aeruginosa_upregulated
WBPaper00056443:sek-1(km4)_downregulated
WBPaper00056471:flcn-1(ok975)_upregulated
WBPaper00056550:ceh-60(ok1485)_upregulated_AdultDay4
WBPaper00056586:kri-1(ok1251);mpk-2(ok219)_downregulated
WBPaper00056586:kri-1(ok1251)_upregulated
WBPaper00056809:smn-1(ok355)_upregulated
WBPaper00057041:spc-1(cas971)_downregulated
WBPaper00057041:unc-70(cas983)_downregulated
WBPaper00057068:Cadmium_upregulated
WBPaper00057068:ints-4(RNAi)_upregulated
WBPaper00057143:ztf-11(RNAi)_upregulated
WBPaper00057347:nhr-14(tm1473)_upreglated
WBPaper00058948:PA14_downregulated
WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
WBPaper00059421:daf-1(m40);daf-3(mgDf90)_upregulated
WBPaper00059421:daf-1(m40)_upregulated
WBPaper00059537:ngn-1(ok2200)_upregulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059735:glucose_downregulated_lpin-1(RNAi)
WBPaper00059754:E.faecalis_OG1RF_upregulated
WBPaper00059754:P.aeruginosa_PA14_upregulated
WBPaper00059895:wounding_upregulated
WBPaper00059987:Wounding_upregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060434:pH4.33_vs_pH6.33_uprgulated
WBPaper00060852:Benzo[a]pyrene_upregulated
WBPaper00061081:E.faecalis_upregulated_N2
WBPaper00061081:E.faecalis_upregulated_skpo-1(ok1640)
WBPaper00061340:FLP
WBPaper00061340:PLM
WBPaper00061341:28C_24h_upregulated
WBPaper00061341:28C_48h_upregulated
WBPaper00061424:Diet_MYb120_upregulated
WBPaper00061527:sre-33-ZK1025.1_8337
WBPaper00061530:nhr-49(e2144)_upregulated
WBPaper00061590:CGP37157_upregulated
WBPaper00061753:csr-1(tor159)_upregulated_25C
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062184:PA14_upregulated
WBPaper00062193:skn-1(RNAi)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062345:bortezomib_4h_upregulated_N2
WBPaper00062345:bortezomib_4h_upregulated_zip-1(jy13)
WBPaper00062446:nhr-8(hd117)_upregulated
WBPaper00062446:nhr-8(ok186)_upregulated
WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064158:xpo-1(RNAi)_upregulated
WBPaper00064403:Heat-killed-E.Coli_upregulated
WBPaper00064539:nhr-114(gk849)_upregulated
WBPaper00064661:lpd-3(ok2138)_upregulated
WBPaper00064871:PA14_upregulated_AWA
WBPaper00065029:cadmium_upregulated
WBPaper00065225:nhr-42(tm1375)_upregulated_S.aureus-infected
WBPaper00065225:nhr-42(tm1375)_upregulated_uninfected
WBPaper00065734:unc-25(e156)_upregulated
WBPaper00065746:eat-2(ad1113)_upregulated
WBPaper00065749:endu-2(tm4977)_upregulated
WBPaper00065749:Heat-Shock-With-Recovery_upregulated_N2
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
WBPaper00066204:CdCl2_upregulated_mRNA
WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
WBPaper00066232:hsf-1(RNAi)_upregulated_WT
cgc4489_group_24
cgc4489_group_25
WBPaper00025141:N2_Expressed_Genes
WBPaper00026980:intestine_enriched
WBPaper00028482:PA14_upregulated
WBPaper00031003:hlh_1_enriched
WBPaper00032062:age_regulated_genes
WBPaper00037695:CC_3-day
WBPaper00038231:Cry5B_1.5-fold_upregulated
WBPaper00038231:Cry5B_2-fold_upregulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00044091:Bpseudomallei_induced_2h
WBPaper00044091:Bpseudomallei_induced_4h
WBPaper00044091:Bpseudomallei_induced_8h
WBPaper00044091:Bpseudomallei_induced_12h
WBPaper00045960:L4-lethargus_upregulated
WBPaper00046083:pmk-1(km25)_OP50_downregulated
WBPaper00048989:N2_rapamycin_upregulated
WBPaper00055899:nitroguanidine_regulated
WBPaper00056330:mrps-5(RNAi)_upregulated
[cgc5976]:class_2
[cgc6390]:Cluster_C
Map_infoPositivePositive_cloneY41D4BInferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIV-17.6357
MethodGene