WormBase Tree Display for Gene: WBGene00021400
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| WBGene00021400 | SMap | S_parent | Sequence | Y38C1AA | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | gegf-1 | Person_evidence | WBPerson260 | |||||
| Sequence_name | Y38C1AA.9 | ||||||||
| Molecular_name | Y38C1AA.9 | ||||||||
| Y38C1AA.9.1 | |||||||||
| CE25243 | |||||||||
| Other_name | Y38C1AA.b | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y38C1AA.9 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | gegf-1 | ||||||||
| DB_info | Database | AceView | gene | 4A906 | |||||
| WormQTL | gene | WBGene00021400 | |||||||
| WormFlux | gene | WBGene00021400 | |||||||
| NDB | locus_tag | CELE_Y38C1AA.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021400|UniProtKB=Q9N432 | |||||||
| family | PTHR24044 | ||||||||
| NCBI | gene | 189642 | |||||||
| RefSeq | protein | NM_067470.3 | |||||||
| TrEMBL | UniProtAcc | Q9N432 | |||||||
| UniProt_GCRP | UniProtAcc | Q9N432 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 12 Jan 2023 20:48:33 | WBPerson51134 | Name_change | CGC_name | gegf-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | gegf | ||||||||
| Allele (22) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (28) | |||||||||
| Paralog | WBGene00000185 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00001148 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00001609 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00004963 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00012917 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00018041 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00019901 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Automated_description | Enriched in ABplpppppp; ABprpppppp; neuronal sheath cell; and neurons based on microarray; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; skn-1; and hsf-1 based on tiling array; microarray; and RNA-seq studies. Is affected by nine chemicals including rotenone; D-glucose; and Zidovudine based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: EGF-like domain and Phosphorylation site. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y38C1AA.9 | |||||||
| Corresponding_transcript | Y38C1AA.9.1 | ||||||||
| Other_sequence | MH07204 | ||||||||
| Acan_isotig14401 | |||||||||
| Dviv_isotig22732 | |||||||||
| OOC03465_1 | |||||||||
| ACC29045_1 | |||||||||
| EY466441.1 | |||||||||
| Oden_isotig15731 | |||||||||
| Oden_isotig15730 | |||||||||
| PPC07681_1 | |||||||||
| Associated_feature | WBsf995080 | ||||||||
| WBsf995081 | |||||||||
| WBsf1016499 | |||||||||
| WBsf1016500 | |||||||||
| WBsf229649 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00036826 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00055991 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00070197 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1021617 | ||||||||
| Expr1159509 | |||||||||
| Expr2007295 | |||||||||
| Expr2025528 | |||||||||
| Microarray_results (14) | |||||||||
| Expression_cluster (136) | |||||||||
| Map_info | Positive | Positive_clone | Y38C1AA | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | IV | -26.8853 | |||||||
| Method | Gene |
