WormBase Tree Display for Gene: WBGene00021400

WBGene00021400 SMap: S_parent: Sequence: Y38C1AA
  Identity: Version: 2
    Name: CGC_name: gegf-1 Person_evidence: WBPerson260
      Sequence_name: Y38C1AA.9
      Molecular_name: Y38C1AA.9
        Y38C1AA.9.1
        CE25243
      Other_name: Y38C1AA.b Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_Y38C1AA.9 Accession_evidence: NDB BX284604
      Public_name: gegf-1
    DB_info: Database: AceView gene 4A906
        WormQTL gene WBGene00021400
        WormFlux gene WBGene00021400
        NDB locus_tag CELE_Y38C1AA.9
        Panther gene CAEEL|WormBase=WBGene00021400|UniProtKB=Q9N432
          family PTHR24044
        NCBI gene 189642
        RefSeq protein NM_067470.3
        TrEMBL UniProtAcc Q9N432
        UniProt_GCRP UniProtAcc Q9N432
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:04 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 12 Jan 2023 20:48:33 WBPerson51134 Name_change: CGC_name: gegf-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: gegf
    Allele (22)
    RNASeq_FPKM (74)
    Ortholog: WBGene00024858 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00059518 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00075932 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00135499 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00092259 Pristionchus pacificus From_analysis: Inparanoid_8
      WBGene00226677 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g11575 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g6192 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g14973 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g5554 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g7121 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g5282 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g574 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g5583 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g9677 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g19525 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00007.g592 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-Y38C1AA.9 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g12265 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00223.g7416 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_23935 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_014655 Caenorhabditis remanei From_analysis: WormBase-Compara
      Pan_g9215 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_40119400 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g9450 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00245990 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00106757 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00265759 Strongyloides ratti From_analysis: WormBase-Compara
    Paralog: WBGene00000185 Caenorhabditis elegans From_analysis: Panther
      WBGene00001148 Caenorhabditis elegans From_analysis: Panther
      WBGene00001609 Caenorhabditis elegans From_analysis: Panther
      WBGene00004963 Caenorhabditis elegans From_analysis: Panther
      WBGene00012917 Caenorhabditis elegans From_analysis: Panther
      WBGene00018041 Caenorhabditis elegans From_analysis: Panther
      WBGene00019901 Caenorhabditis elegans From_analysis: Panther
    Structured_description: Automated_description: Enriched in ABplpppppp; ABprpppppp; neuronal sheath cell; and neurons based on microarray; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; skn-1; and hsf-1 based on tiling array; microarray; and RNA-seq studies. Is affected by nine chemicals including rotenone; D-glucose; and Zidovudine based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: EGF-like domain and Phosphorylation site. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y38C1AA.9
    Corresponding_transcript: Y38C1AA.9.1
    Other_sequence: MH07204
      Acan_isotig14401
      Dviv_isotig22732
      OOC03465_1
      ACC29045_1
      EY466441.1
      Oden_isotig15731
      Oden_isotig15730
      PPC07681_1
    Associated_feature: WBsf995080
      WBsf995081
      WBsf1016499
      WBsf1016500
      WBsf229649
  Experimental_info: RNAi_result: WBRNAi00036826 Inferred_automatically: RNAi_primary
      WBRNAi00055991 Inferred_automatically: RNAi_primary
      WBRNAi00070197 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1021617
      Expr1159509
      Expr2007295
      Expr2025528
    Microarray_results (14)
    Expression_cluster (136)
  Map_info: Positive: Positive_clone: Y38C1AA Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: IV -26.8853
  Method: Gene