WormBase Tree Display for Gene: WBGene00020871

WBGene00020871 SMap: S_parent: Sequence: T28A11
  Identity: Version: 1
    Name: Sequence_name: T28A11.4
      Molecular_name: T28A11.4
        T28A11.4.1
        CE14287
      Other_name: CELE_T28A11.4 Accession_evidence: NDB BX284605
      Public_name: T28A11.4
    DB_info: Database: AceView gene 5D747
        WormQTL gene WBGene00020871
        WormFlux gene WBGene00020871
        NDB locus_tag CELE_T28A11.4
        Panther gene CAEEL|WormBase=WBGene00020871|UniProtKB=P91520
          family PTHR35182
        NCBI gene 189011
        RefSeq protein NM_071502.3
        TREEFAM TREEFAM_ID TF320479
        TrEMBL UniProtAcc P91520
        UniProt_GCRP UniProtAcc P91520
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:03 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (27)
    RNASeq_FPKM (74)
    Ortholog (30)
    Paralog: WBGene00007497 Caenorhabditis elegans From_analysis: TreeFam
            WormBase-Compara
      WBGene00010216 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00015281 Caenorhabditis elegans From_analysis: Panther
      WBGene00015476 Caenorhabditis elegans From_analysis: Panther
      WBGene00017127 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00017128 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00022230 Caenorhabditis elegans From_analysis: Panther
      WBGene00044516 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
    Structured_description: Automated_description: Enriched in dopaminergic neurons; muscle cell; and ventral nerve cord based on tiling array and RNA-seq studies. Is affected by several genes including daf-16; daf-2; and daf-12 based on tiling array; RNA-seq; and microarray studies. Is affected by four chemicals including copper sulfate; multi-walled carbon nanotube; and Rifampin based on microarray and RNA-seq studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T28A11.4
    Corresponding_transcript: T28A11.4.1
  Experimental_info: RNAi_result: WBRNAi00019367 Inferred_automatically: RNAi_primary
      WBRNAi00054365 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1025871
      Expr1157912
    Drives_construct: WBCnstr00024822
    Construct_product: WBCnstr00024822
    Microarray_results (15)
    Expression_cluster: WBPaper00032528:L3_depleted
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:dopaminergic-neurons_larva_enriched
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_larva_enriched
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
      WBPaper00040560:hpl-2_embryo_downregulated
      WBPaper00040560:hpl-2_L3_upregulated
      WBPaper00042067:Cu2+_upregulated_kgb-1_top13
      WBPaper00044578:reduced-humidity_downregulated_microarray
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045934:wrn-1(gk99)_downregulated
      WBPaper00046497:B.thuringiensis_0.1mix_upregulated_6h
      WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
      WBPaper00049377:MWCNT_upregulated
      WBPaper00049498:npr-1(ur89)_regulated_1
      WBPaper00049732:blmp-1(tm548);daf-7(e1372ts)_vs_daf-7(e1372ts)_downregulated
      WBPaper00050053:muscle_enriched_Day4
      WBPaper00050053:muscle_enriched_Day12
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050743:elli-1(sam-3)_downregulated
      WBPaper00050801:DAF-12_dauer_regulome
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050801:DPY-21_dauer_regulome
      WBPaper00050990:intestine_expressed
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053388:dauer_regulated_Cluster4
      WBPaper00055013:spt-16(RNAi)_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055354:Rifampicin_upregulated
      WBPaper00055386:daf-2(e1370)_upregulated
      WBPaper00056809:smn-1(ok355)_upregulated
      WBPaper00059987:Wounding_upregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00061527:F14F7.4_16243-ZK353.3
      WBPaper00062354:H.zoospora_6h_regulated
      WBPaper00062446:nhr-8(hd117)_upregulated
      WBPaper00062497:xpf-1(tm2842)_downregulated
      WBPaper00064229:B.thuringiensis-Cry5Ba_upregulated
      WBPaper00064509:static-magnetic-field_downregulated
      WBPaper00024393:strongly_regulated_dauer_genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00027342:alpha-Synuclein(A53T)_downregulated
      WBPaper00036286:Pattern_F
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_aging
      WBPaper00040858:eQTL_regulated_juvenile
      WBPaper00040858:eQTL_regulated_old
      WBPaper00040858:eQTL_regulated_reproductive
      WBPaper00042067:Cu2+_upregulated_kgb-1_top50
      WBPaper00042067:Cu2+_upregulated_kgb-1_top66
      WBPaper00042067:Cu2+_upregulated_WT
      WBPaper00046083:oga-1(ok1207)_OP50_upregulated
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_SM
    Interaction: WBInteraction000213068
      WBInteraction000267016
  Map_info: Positive: Positive_clone: T28A11 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: V -12.398
  Reference: WBPaper00064623
  Method: Gene