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WormBase Tree Display for Gene: WBGene00020740

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Name Class

WBGene00020740SMapS_parentSequenceT23F4
IdentityVersion1
NameSequence_nameT23F4.2
Molecular_name (12)
Other_nameCELE_T23F4.2Accession_evidenceNDBBX284602
Public_nameT23F4.2
DB_infoDatabaseAceViewgene2B455
WormQTLgeneWBGene00020740
WormFluxgeneWBGene00020740
NDBlocus_tagCELE_T23F4.2
PanthergeneCAEEL|WormBase=T23F4.2b|UniProtKB=A0A0S4XRI4
familyPTHR38608
NCBIgene173501
RefSeqproteinNM_001318304.3
NM_001318303.3
NM_001318302.4
NM_061522.5
TrEMBLUniProtAccA0A0S4XR68
O17261
A0A0S4XR74
A0A0S4XRI4
UniProt_GCRPUniProtAccA0A0S4XRI4
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:03WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
StatusLive
Gene_infoBiotypeSO:0001217
AlleleWBVar01499702
WBVar00356351
WBVar00356352
WBVar00356353
WBVar00356354
WBVar02070610
WBVar00164347
WBVar00164348
WBVar00164349
WBVar01239217
WBVar01476909
WBVar01476910
WBVar01476911
WBVar01239228
WBVar01574759
WBVar01239239
WBVar01500106
WBVar02129303
WBVar02106119
WBVar01360544
WBVar01705046
WBVar01533375
WBVar01933289
WBVar01533376
WBVar00233473
WBVar01682738
WBVar01682739
WBVar01715968
WBVar01715969
WBVar01715970
WBVar01435792
WBVar01898225
WBVar01694951
WBVar01294046
WBVar00036001
WBVar00703456
WBVar00703457
WBVar00703458
WBVar00036006
WBVar00703459
WBVar00703460
WBVar00036011
WBVar00703461
WBVar00703462
WBVar00703463
WBVar00703464
WBVar00703465
WBVar00299498
WBVar00703466
WBVar00703467
WBVar00703468
WBVar00703469
WBVar00703470
WBVar00703471
WBVar00703472
WBVar00703473
WBVar00703474
WBVar00267898
WBVar02151773
WBVar00267899
WBVar01959114
RNASeq_FPKM (74)
OrthologWBGene00029337Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00064617Caenorhabditis remaneiFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00160208Caenorhabditis brenneriFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00124890Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00096956Pristionchus pacificusFrom_analysisInparanoid_8
CBOVI.g7323Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g137Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g18410Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g19064Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g18280Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP31.g214Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g12129Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g6498Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g7999Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g24378Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00828.g14427Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-T23F4.2Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold605.g5652Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_02971.g28589Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_16412Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_008042Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g02389Oscheius tipulaeFrom_analysisWormBase-Compara
Sp34_20013000Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g3306Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionEnriched in amphid socket cell; head mesodermal cell; intestine; mechanosensory neurons; and rectal gland cell based on tiling array; proteomic; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; skn-1; and eat-2 based on microarray; proteomic; tiling array; and RNA-seq studies. Is affected by fifteen chemicals including rotenone; Rifampin; and stavudine based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: Phosphorylation site.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDST23F4.2a
T23F4.2b
T23F4.2c
T23F4.2d
Corresponding_CDS_historyT23F4.2:wp86
Corresponding_transcriptT23F4.2a.1
T23F4.2b.1
T23F4.2c.1
T23F4.2d.1
Other_sequence (11)
Associated_featureWBsf986587
WBsf986588
WBsf1011497
Experimental_infoRNAi_resultWBRNAi00053952Inferred_automaticallyRNAi_primary
WBRNAi00103540Inferred_automaticallyRNAi_primary
WBRNAi00035874Inferred_automaticallyRNAi_primary
WBRNAi00019092Inferred_automaticallyRNAi_primary
Expr_patternExpr1020198
Expr1039034
Expr1157497
Expr2006413
Expr2024632
Microarray_results (19)
Expression_clusterWBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00037950:PVD-OLL-neurons_larva_enriched
WBPaper00037950:PVD-OLL-neurons_larva_SelectivelyEnriched
WBPaper00038168:lin-15B(n744)_upregulated
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
WBPaper00040134:nhr-49(RNAi)_regulated_protein
WBPaper00040560:hpl-2_embryo_upregulated
WBPaper00040990:PA14_upregulated
WBPaper00042215:wdr-23(tm1817)_upregulated
WBPaper00044037:eat-2_upregulated
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044736:flat_dev_expression
WBPaper00045314:S.aureus-induced_N2
WBPaper00045316:prg-1_upregulated_L3
WBPaper00045417:128Q-huntingtin_downreglated
WBPaper00045861:ash-2(tm1095)_upregulated
WBPaper00046496:Rifampicin_upregulated
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
WBPaper00046805:csr-1(RNAi)_upregulated_Set1
WBPaper00046805:csr-1(RNAi)_upregulated_Set2
WBPaper00048988:neuron_expressed
WBPaper00049217:TCER-1_upregulated
WBPaper00049498:npr-1(ur89)_regulated_5
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
WBPaper00049942:HeatShock_upregulated_hsf-1(RNAi)
WBPaper00050096:P.aeruginosa_upregulated
WBPaper00050163:chd-3(eh4);let-418(RNAi)_downregulated_24-cell-embryo
WBPaper00050163:chd-3(eh4)_downregulated_24-cell-embryo
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_adult_25C
WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_adult_25C
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00051245:intestine_specific
WBPaper00051305:vit-2(ac3)_upregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053295:lin-22(ot267)_downregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053599:oocyte_vs_mitosis_upregulated
WBPaper00053810:daf-2(e1370)_upregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00054758:alg-1(gk204)_upregulated
WBPaper00055060:flr-1(RNAi)_upregulated
WBPaper00055354:eat-2(ad1116)_downregulated
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Rapamycin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055354:Rifampicin-Allantoin_downregulated
WBPaper00055626:pry-1(mu38)_downregulated
WBPaper00055941:nuo-6(qm200)_upregulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_upregulated_N2
WBPaper00056167:Cry5B_downregulated
WBPaper00056290:hsp-6(mg585)_upregulated
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056471:S.aureus-4h_upregulated_N2
WBPaper00056586:kri-1(ok1251)_upregulated
WBPaper00056826:hmc_biased
WBPaper00056855:his-72(uge40)_upregulated
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00057068:Cadmium_upregulated
WBPaper00058711:paraquat_downregulated
WBPaper00058725:sftb-1(cer39)_upregulated
WBPaper00058948:PA14_downregulated
WBPaper00059027:neuron-synapses_depleted
WBPaper00059117:B.subtilis_upregulated
WBPaper00059421:daf-1(m40)_upregulated
WBPaper00059566:wdr-23(mac32)_upregulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059754:E.faecalis_OG1RF_upregulated
WBPaper00059754:P.aeruginosa_PA14_upregulated
WBPaper00059763:neuron_expressed
WBPaper00059987:Wounding_upregulated
WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr
WBPaper00060459:bcat-1(RNAi)_upregulated
WBPaper00060526:plp-1(ok2155)_downregulated
WBPaper00060909:atfs-1(cmh15)_downregulated
WBPaper00060911:prx-5(RNAi)_upregulated_mRNA
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061007:X.citri_upregulated
WBPaper00061081:E.faecalis_upregulated_N2
WBPaper00061081:E.faecalis_upregulated_skpo-1(ok1640)
WBPaper00061340:AMso
WBPaper00061340:Rectal_gland
WBPaper00061341:28C_24h_upregulated
WBPaper00061341:28C_48h_upregulated
WBPaper00061405:S.aureus_upregulated_starvation
WBPaper00061479:hda-1(ne4752)_upregulated
WBPaper00061479:ubc-9(ne4833)_upregulated
WBPaper00061527:ccg-1_12351-ZC410.5
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062184:PA14_upregulated
WBPaper00062193:skn-1(RNAi)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062446:nhr-8(hd117)_upregulated
WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064637:cox-5B(RNAi)_upregulated
WBPaper00064716:paraquat_downregulated
WBPaper00064788:ketamine_upregulated
WBPaper00064871:PA14_upregulated_AWA
WBPaper00064939:vit-5(RNAi)_upregulated
WBPaper00065258:anchor-cell_depleted
WBPaper00065734:unc-25(e156)_upregulated
WBPaper00065749:endu-2(tm4977)_upregulated
WBPaper00065749:Heat-Shock-With-Recovery_upregulated_N2
WBPaper00065841:30_0
WBPaper00065841:30_3
WBPaper00065841:30_4
WBPaper00065841:34_0
WBPaper00065841:34_1
WBPaper00065841:146_0
WBPaper00065975:P-body_vs_oocyte_enriched
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066062:xrep-4(lax137)_upregulated
WBPaper00066110:Doxorubicin_upregulated_diploid
WBPaper00066110:tetraploid_vs_diploid_upregulated
WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
WBPaper00066232:hsf-1(RNAi)_upregulated_WT
cgc4489_group_18
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00028789:PA14_vs_gacA_upregulated_4hr
WBPaper00028789:PA14_vs_OP50_upregulated_4hr
WBPaper00028789:PA14_vs_OP50_upregulated_8hr
WBPaper00029437:dcr-1_upregulated
WBPaper00031003:0hr_muscle_depleted
WBPaper00031003:24hr_muscle_depleted
WBPaper00031003:total_muscle_depleted
WBPaper00031252:AIN-1_IP_enriched
WBPaper00031252:AIN-2_IP_enriched
WBPaper00035084:L2_enriched_AIN-2_IP
WBPaper00035084:L4_enriched_AIN-2_IP
WBPaper00035227:heat_shock_regulated
WBPaper00037695:WC_5-day
WBPaper00038060:SUMO-1_downregulated
WBPaper00038231:Cry5B_1.5-fold_upregulated
WBPaper00038231:Cry5B_2-fold_upregulated
WBPaper00040210:Chlorpyrifos_24C_regulated
WBPaper00040210:Diazinon_24C_regulated
WBPaper00040985:AIN-2_asynchronous_intestine
WBPaper00040985:AIN-2_L4_intestine
WBPaper00041002:HF_3d_2.0mM_Up
WBPaper00041002:HQ_3d_2.0mM_Up
WBPaper00041174:environmental
WBPaper00041174:environmental_prime
WBPaper00041370:spg-7(RNAi)_upregulated
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_EtBr-exposed_51h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_3h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_3h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
WBPaper00042274:tbx-2(bx59)_upregulated
WBPaper00047070:DAF-16-dependent_UV_response
WBPaper00047070:N2_starvation_upregulated
WBPaper00048989:N2_rapamycin_upregulated
[cgc6390]:Cluster_A
InteractionWBInteraction000434374
Map_infoPositivePositive_cloneT23F4Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionII-15.5646
MethodGene