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WormBase Tree Display for Gene: WBGene00020637

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Name Class

WBGene00020637SMapS_parentSequenceT20H9
IdentityVersion2
NameCGC_namefbxa-7Person_evidenceWBPerson655
Sequence_nameT20H9.1
Molecular_nameT20H9.1
T20H9.1.1
CE39410
Other_nameCELE_T20H9.1Accession_evidenceNDBBX284603
Public_namefbxa-7
DB_infoDatabaseAceViewgene3D336
WormQTLgeneWBGene00020637
WormFluxgeneWBGene00020637
NDBlocus_tagCELE_T20H9.1
PanthergeneCAEEL|WormBase=WBGene00020637|UniProtKB=O44892
familyPTHR23015
NCBIgene188664
RefSeqproteinNM_065122.3
TREEFAMTREEFAM_IDTF322006
TrEMBLUniProtAccO44892
UniProt_GCRPUniProtAccO44892
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:03WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
212 Dec 2005 15:18:56WBPerson2970Name_changeCGC_namefbxa-7
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classfbxa
Allele (33)
RNASeq_FPKM (74)
Ortholog (42)
Paralog (225)
Structured_descriptionAutomated_descriptionEnriched in intestine based on RNA-seq studies. Is affected by several genes including skn-1; sir-2.1; and lin-35 based on microarray; tiling array; and RNA-seq studies. Is affected by nine chemicals including Mercuric Chloride; allantoin; and Psoralens based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: F-box-like domain superfamily; FTH domain; F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDST20H9.1
Corresponding_CDS_historyT20H9.1:wp151
Corresponding_transcriptT20H9.1.1
Experimental_infoRNAi_resultWBRNAi00006611Inferred_automaticallyRNAi_primary
WBRNAi00053677Inferred_automaticallyRNAi_primary
WBRNAi00018937Inferred_automaticallyRNAi_primary
Expr_patternExpr1021540
Expr1157230
Microarray_results (14)
Expression_clusterWBPaper00032528:L3_depleted
WBPaper00038168:lin-15B(n744)_upregulated
WBPaper00038168:lin-35_upregulated
WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
WBPaper00042194:nhr-114(RNAi)_downregulated
WBPaper00042477:rsr-2(RNAi)_upregulated_TilingArray
WBPaper00044316:HgCl2_20uM_upregulated
WBPaper00044578:reduced-humidity_downregulated_microarray
WBPaper00045257:bar-1(ga80)_upregulated
WBPaper00045401:N.parisii_8h_upregulated
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_6h
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050504:hrp-2(RNAi)_upregulated
WBPaper00050990:intestine_enriched
WBPaper00050990:intestine_expressed
WBPaper00051137:N.parisii-virus_upregulated_N2
WBPaper00051137:Orsay-virus_upregulated_N2
WBPaper00051137:Orsay-virus_upregulated_rde-1(ne219)
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00054493:hpl-2(tm1489)_downregulated
WBPaper00055013:spt-16(RNAi)_upregulated
WBPaper00055354:Allantoin_upregulated
WBPaper00055354:Psora-Allantoin_upregulated
WBPaper00055354:Psora_upregulated
WBPaper00055354:Rapamycin-Rifampicin_upregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055354:Rifampicin-Psora_upregulated
WBPaper00055354:Rifampicin_upregulated
WBPaper00056034:pals-22(jy3)_upregulated
WBPaper00056034:pals-25(jy9)_upregulated
WBPaper00056809:smn-1(ok355)_upregulated
WBPaper00058711:paraquat_downregulated
WBPaper00058711:skn-1(lax188)_upregulated
WBPaper00058711:wdr-5(ok1417)_downregulated
WBPaper00059253:stearic-acid_upregulated
WBPaper00060886:spr-5(by101);met-2(n4256)_upregulated
WBPaper00061341:28C_24h_upregulated
WBPaper00061341:28C_48h_upregulated
WBPaper00061527:C17H1.6-C17H1.13
WBPaper00062056:lin-15B(n744)_upregulated
WBPaper00062056:lin-15B(we23)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062345:bortezomib_4h_upregulated_N2
WBPaper00064107:lin-35(n745)_upregulated
WBPaper00064532:pals-22(jy3)_upregulated
WBPaper00064661:lpd-3(ok2138)_upregulated
WBPaper00065086:JU1400_N.ausubeli_regulated
WBPaper00065086:JU1400_N.ferruginous_regulated
WBPaper00065086:JU1400_N.ironsii_regulated
WBPaper00065086:JU1400_N.parisii_regulated
WBPaper00065086:N2_N.ausubeli_regulated
WBPaper00065086:N2_N.ferruginous_regulated
WBPaper00065086:N2_N.ironsii_regulated
WBPaper00065086:N2_N.parisii_regulated
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065096:npr-8(ok1439)_downregulated_Day10_20C
WBPaper00065984:pals-17(syb3980)_upregulated
WBPaper00066204:CdCl2_upregulated_mRNA
WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
WBPaper00066232:hsf-1(RNAi)_upregulated_WT
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00035227:heat_shock_regulated
WBPaper00036286:Pattern_H
WBPaper00041609:hpl-1_hpl-2_upregulated
Interaction (26)
Map_infoMapIIIPosition-14.859Error0.002335
PositivePositive_cloneT20H9Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene