WormBase Tree Display for Gene: WBGene00020453
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| WBGene00020453 | SMap | S_parent | Sequence | CHROMOSOME_III | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | fbxa-55 | Person_evidence | WBPerson655 | |||||
| Sequence_name | T12B5.6 | ||||||||
| Molecular_name | T12B5.6b | ||||||||
| T12B5.6a | |||||||||
| CE39403 | |||||||||
| T12B5.6c | |||||||||
| CE51680 | |||||||||
| T12B5.6b.1 | |||||||||
| T12B5.6c.1 | |||||||||
| Other_name | CELE_T12B5.6 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | fbxa-55 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00020453 | |||||
| WormFlux | gene | WBGene00020453 | |||||||
| NDB | locus_tag | CELE_T12B5.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00020453|UniProtKB=Q2WF55 | |||||||
| family | PTHR23015 | ||||||||
| NCBI | gene | 188445 | |||||||
| RefSeq | protein | NM_001047409.4 | |||||||
| NM_001330938.4 | |||||||||
| NR_138510.1 | |||||||||
| TREEFAM | TREEFAM_ID | TF322360 | |||||||
| TrEMBL | UniProtAcc | A0A163VTZ6 | |||||||
| Q2WF55 | |||||||||
| UniProt_GCRP | UniProtAcc | Q2WF55 | |||||||
| RNAcentral | URSid | URS00009E1D4F | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:03 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 12 Dec 2005 15:18:56 | WBPerson2970 | Name_change | CGC_name | fbxa-55 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | fbxa | ||||||||
| Allele | WBVar02122810 | ||||||||
| WBVar01606478 | |||||||||
| WBVar02124101 | |||||||||
| WBVar02120976 | |||||||||
| WBVar02120977 | |||||||||
| WBVar02120978 | |||||||||
| WBVar02122452 | |||||||||
| WBVar01540528 | |||||||||
| WBVar01540529 | |||||||||
| WBVar01500082 | |||||||||
| WBVar01540530 | |||||||||
| WBVar02123377 | |||||||||
| WBVar00559508 | |||||||||
| WBVar00388939 | |||||||||
| WBVar01627681 | |||||||||
| WBVar01917851 | |||||||||
| WBVar02101304 | |||||||||
| WBVar02123578 | |||||||||
| WBVar01499552 | |||||||||
| WBVar02124686 | |||||||||
| WBVar02121742 | |||||||||
| WBVar01322754 | |||||||||
| WBVar01322755 | |||||||||
| WBVar02122116 | |||||||||
| WBVar01322756 | |||||||||
| WBVar01322759 | |||||||||
| WBVar01322760 | |||||||||
| WBVar01322762 | |||||||||
| WBVar01322763 | |||||||||
| WBVar02120832 | |||||||||
| WBVar01322764 | |||||||||
| WBVar01498832 | |||||||||
| WBVar01322765 | |||||||||
| WBVar01322770 | |||||||||
| WBVar01322771 | |||||||||
| WBVar02120474 | |||||||||
| WBVar02124343 | |||||||||
| WBVar02121583 | |||||||||
| WBVar02120666 | |||||||||
| WBVar02121404 | |||||||||
| WBVar01506239 | |||||||||
| WBVar01506240 | |||||||||
| WBVar01506241 | |||||||||
| WBVar01506242 | |||||||||
| WBVar00032718 | |||||||||
| WBVar01506243 | |||||||||
| WBVar01506244 | |||||||||
| WBVar00032723 | |||||||||
| WBVar02124181 | |||||||||
| WBVar02121974 | |||||||||
| WBVar00032728 | |||||||||
| WBVar00032733 | |||||||||
| WBVar00032738 | |||||||||
| WBVar01255486 | |||||||||
| WBVar01255491 | |||||||||
| WBVar00032743 | |||||||||
| WBVar02100637 | |||||||||
| WBVar00032748 | |||||||||
| WBVar02102112 | |||||||||
| WBVar02011467 | |||||||||
| WBVar00032753 | |||||||||
| WBVar01643311 | |||||||||
| WBVar00032758 | |||||||||
| WBVar01643312 | |||||||||
| WBVar01643313 | |||||||||
| WBVar00032763 | |||||||||
| WBVar00032768 | |||||||||
| WBVar00032773 | |||||||||
| WBVar01700475 | |||||||||
| WBVar00032778 | |||||||||
| WBVar02122559 | |||||||||
| WBVar02012669 | |||||||||
| WBVar01700476 | |||||||||
| WBVar01700477 | |||||||||
| WBVar02124401 | |||||||||
| WBVar02124953 | |||||||||
| WBVar00032788 | |||||||||
| WBVar01415193 | |||||||||
| WBVar01415194 | |||||||||
| WBVar02122933 | |||||||||
| WBVar00032793 | |||||||||
| WBVar02123672 | |||||||||
| WBVar00032798 | |||||||||
| WBVar00602751 | |||||||||
| WBVar02075584 | |||||||||
| WBVar02124779 | |||||||||
| WBVar00142753 | |||||||||
| WBVar01769473 | |||||||||
| WBVar01769474 | |||||||||
| WBVar01769475 | |||||||||
| WBVar01769476 | |||||||||
| WBVar01769477 | |||||||||
| WBVar01667123 | |||||||||
| WBVar00800368 | |||||||||
| WBVar00007881 | |||||||||
| WBVar00800369 | |||||||||
| WBVar00800370 | |||||||||
| WBVar00800371 | |||||||||
| WBVar00800372 | |||||||||
| WBVar01389863 | |||||||||
| WBVar00800373 | |||||||||
| WBVar00800374 | |||||||||
| WBVar01389871 | |||||||||
| WBVar01389873 | |||||||||
| WBVar00800375 | |||||||||
| WBVar01389877 | |||||||||
| WBVar00800376 | |||||||||
| WBVar00800377 | |||||||||
| WBVar01389879 | |||||||||
| WBVar00800378 | |||||||||
| WBVar00800379 | |||||||||
| WBVar00800380 | |||||||||
| WBVar00800381 | |||||||||
| WBVar00800382 | |||||||||
| WBVar02121865 | |||||||||
| WBVar01893052 | |||||||||
| WBVar01893053 | |||||||||
| WBVar01548338 | |||||||||
| WBVar01577849 | |||||||||
| WBVar01577850 | |||||||||
| WBVar01577851 | |||||||||
| WBVar01577852 | |||||||||
| WBVar02089496 | |||||||||
| WBVar02087841 | |||||||||
| WBVar01577853 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (25) | |||||||||
| Paralog (222) | |||||||||
| Structured_description | Concise_description | This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. | Paper_evidence | WBPaper00012854 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enriched in AFD; ASER; and intestine based on RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by twelve chemicals including rotenone; metformin; and Sirolimus based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Domain of unknown function DUF38/FTH, Caenorhabditis species; FTH domain; and F-box A protein FB224. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T12B5.6b | |||||||
| T12B5.6c | |||||||||
| Corresponding_CDS_history | T12B5.6:wp151 | ||||||||
| T12B5.6a:wp253 | |||||||||
| Corresponding_transcript | T12B5.6a | ||||||||
| T12B5.6b.1 | |||||||||
| T12B5.6c.1 | |||||||||
| Other_sequence | Oden_isotig22831 | ||||||||
| Associated_feature | WBsf991189 | ||||||||
| WBsf1014150 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00035506 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00018634 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00053190 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00006619 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1156782 | ||||||||
| Expr2011557 | |||||||||
| Expr2029795 | |||||||||
| Drives_construct | WBCnstr00025127 | ||||||||
| Construct_product | WBCnstr00025127 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (127) | |||||||||
| Interaction (27) | |||||||||
| Map_info | Map | III | Position | -25.0866 | Error | 0.003123 | |||
| Positive | Positive_clone | T12B5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00012854 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
