WormBase Tree Display for Variation: WBVar00032743
expand all nodes | collapse all nodes | view schema
WBVar00032743 | Name | Public_name | WBVar00032743 | ||
---|---|---|---|---|---|
Other_name | haw37671 | ||||
haw139639 | |||||
cewivar00192426 | |||||
T12B5.6b.1:c.612T>A | |||||
CE51680:p.Ala175= | |||||
CE39403:p.Ala204= | |||||
T12B5.6c.1:c.525T>A | |||||
HGVSg | CHROMOSOME_III:g.933968A>T | ||||
Sequence_details | SMap | S_parent | Sequence | T12B5 | |
Flanking_sequences | tacgactattaatgctaaattcttc | gcatttttccaatgctccaaatgga | |||
Mapping_target | T12B5 | ||||
Type_of_mutation | Substitution | A | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
WGS_Hawaiian_Waterston | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
WBStrain00022850 | From_analysis | WGS_De_Bono | |||
Laboratory | RW | ||||
AX | |||||
Person | WBPerson1562 | ||||
WBPerson4037 | |||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_De_Bono | |||||
WGS_Yanai | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar00559504 | |||
WBVar01389868 | |||||
WBVar01322757 | |||||
Status | Live | ||||
Affects | Gene | WBGene00020453 | |||
Transcript | T12B5.6c.1 | VEP_consequence | synonymous_variant | ||
VEP_impact | LOW | ||||
HGVSc | T12B5.6c.1:c.525T>A | ||||
HGVSp | CE51680:p.Ala175= | ||||
cDNA_position | 543 | ||||
CDS_position | 525 | ||||
Protein_position | 175 | ||||
Exon_number | 3/5 | ||||
Codon_change | gcT/gcA | ||||
Amino_acid_change | A | ||||
T12B5.6b.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | T12B5.6b.1:c.612T>A | ||||
HGVSp | CE39403:p.Ala204= | ||||
cDNA_position | 632 | ||||
CDS_position | 612 | ||||
Protein_position | 204 | ||||
Exon_number | 3/5 | ||||
Codon_change | gcT/gcA | ||||
Amino_acid_change | A | ||||
Reference | WBPaper00038208 | ||||
WBPaper00037807 | |||||
Remark | [20081124 db] this Variation was previously named hw37671 | ||||
Method | WGS_Hawaiian_Waterston |