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WormBase Tree Display for Gene: WBGene00020453

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Name Class

WBGene00020453SMapS_parentSequenceCHROMOSOME_III
IdentityVersion2
NameCGC_namefbxa-55Person_evidenceWBPerson655
Sequence_nameT12B5.6
Molecular_nameT12B5.6b
T12B5.6a
CE39403
T12B5.6c
CE51680
T12B5.6b.1
T12B5.6c.1
Other_nameCELE_T12B5.6Accession_evidenceNDBBX284603
Public_namefbxa-55
DB_infoDatabaseWormQTLgeneWBGene00020453
WormFluxgeneWBGene00020453
NDBlocus_tagCELE_T12B5.6
PanthergeneCAEEL|WormBase=WBGene00020453|UniProtKB=Q2WF55
familyPTHR23015
NCBIgene188445
RefSeqproteinNM_001047409.4
NM_001330938.4
NR_138510.1
TREEFAMTREEFAM_IDTF322360
TrEMBLUniProtAccA0A163VTZ6
Q2WF55
UniProt_GCRPUniProtAccQ2WF55
RNAcentralURSidURS00009E1D4F
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:03WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
212 Dec 2005 15:18:56WBPerson2970Name_changeCGC_namefbxa-55
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classfbxa
Allele (125)
RNASeq_FPKM (74)
Ortholog (15)
Paralog (222)
Structured_descriptionConcise_descriptionThis gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.Paper_evidenceWBPaper00012854
Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionEnriched in AFD; ASER; and intestine based on RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by twelve chemicals including rotenone; metformin; and Sirolimus based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Domain of unknown function DUF38/FTH, Caenorhabditis species; F-box A protein FB224; and FTH domain.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS290 version of WormBase
Date_last_updated11 Sep 2023 00:00:00
Molecular_infoCorresponding_CDST12B5.6b
T12B5.6c
Corresponding_CDS_historyT12B5.6:wp151
T12B5.6a:wp253
Corresponding_transcriptT12B5.6a
T12B5.6b.1
T12B5.6c.1
Other_sequenceOden_isotig22831
Associated_featureWBsf991189
WBsf1014150
Experimental_infoRNAi_resultWBRNAi00035506Inferred_automaticallyRNAi_primary
WBRNAi00018634Inferred_automaticallyRNAi_primary
WBRNAi00053190Inferred_automaticallyRNAi_primary
WBRNAi00006619Inferred_automaticallyRNAi_primary
Expr_patternExpr1156782
Expr2011557
Expr2029795
Drives_constructWBCnstr00025127
Construct_productWBCnstr00025127
Microarray_results (20)
Expression_cluster (120)
Interaction (27)
Map_infoMapIIIPosition-25.0866Error0.003123
PositivePositive_cloneT12B5Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00012854
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene