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WormBase Tree Display for Gene: WBGene00020315

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Name Class

WBGene00020315SMapS_parentSequenceT07E3
IdentityVersion1
NameSequence_nameT07E3.4
Molecular_nameT07E3.4a
T07E3.4a.1
CE01385
T07E3.4b
CE32717
T07E3.4b.1
T07E3.4b.2
Other_nameCELE_T07E3.4Accession_evidenceNDBBX284603
Public_nameT07E3.4
DB_infoDatabaseAceViewgene3H989
WormQTLgeneWBGene00020315
WormFluxgeneWBGene00020315
NDBlocus_tagCELE_T07E3.4
NCBIgene175961
RefSeqproteinNM_001392132.1
NM_066100.6
TREEFAMTREEFAM_IDTF321966
TrEMBLUniProtAccQ22310
Q8IFZ1
UniProt_GCRPUniProtAccQ22310
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:03WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (49)
RNASeq_FPKM (74)
Ortholog (24)
Structured_descriptionConcise_descriptionThis gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.Paper_evidenceWBPaper00012854
Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionEnriched in muscle cell; sensory neurons; and somatic gonad precursor based on microarray and RNA-seq studies. Is affected by several genes including daf-16; daf-2; and glp-1 based on tiling array; RNA-seq; and microarray studies. Is affected by sixteen chemicals including methylmercuric chloride; Tunicamycin; and levamisole based on microarray and RNA-seq studies.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDST07E3.4a
T07E3.4b
Corresponding_transcriptT07E3.4a.1
T07E3.4b.1
T07E3.4b.2
Other_sequence (32)
Associated_featureWBsf645300
WBsf659130
WBsf992894
WBsf1015168
WBsf225167
Experimental_infoRNAi_resultWBRNAi00018373Inferred_automaticallyRNAi_primary
WBRNAi00005574Inferred_automaticallyRNAi_primary
WBRNAi00052764Inferred_automaticallyRNAi_primary
WBRNAi00035308Inferred_automaticallyRNAi_primary
Expr_patternExpr1026558
Expr1038850
Expr1156373
Expr2005971
Expr2024186
Drives_constructWBCnstr00025228
Construct_productWBCnstr00025228
Microarray_results (22)
Expression_clusterWBPaper00031040:TGF-beta_adult_upregulated
WBPaper00036375:enriched_in_PVD_OLL
WBPaper00037055:DAF-16_binding_DNA
WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
WBPaper00044037:eat-2_downregulated
WBPaper00044316:CH3HgCl_7.5uM_upregulated
WBPaper00044736:flat_dev_expression
WBPaper00045050:csr-1(hypomorph)_downregulated
WBPaper00045314:S.aureus-induced_hlh-30(tm1978)
WBPaper00045314:S.aureus-induced_N2
WBPaper00045390:tunicamycin_upregulated
WBPaper00045390:ubc-9(RNAi)_upregulated
WBPaper00045521:Gender_Neutral
WBPaper00045571:germline-ablation_upregulated
WBPaper00045774:clk-1_downregulated
WBPaper00046024:sleep_upregulated_oscillating
WBPaper00046337:polysomal_daf-2_vs_daf-2;daf-16_downregulated
WBPaper00046337:polysomal_N2_vs_daf-2_downregulated
WBPaper00046741:Garlic-Extract_upregulated_mRNA
WBPaper00047132:glp-1(ts)-25C_upregulated
WBPaper00048988:neuron_expressed
WBPaper00049495:starvation-refeeding_regulated
WBPaper00049545:cco-1(RNAi)_upregulated
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050053:muscle_enriched_Day4
WBPaper00050094:mes-6(bn66)_upregulated
WBPaper00050096:P.aeruginosa_downregulated
WBPaper00050344:AFD-neuron_enriched
WBPaper00050344:ASER-neuron_enriched
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:daf-2(e1370)_vs_daf-2(e1370);mir-34(gk437)_regulated_dauer_25C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00050903:mir-35-41(nDf50)_25C_downregulated
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:pharynx_expressed
WBPaper00051257:Levamisole_upregulated
WBPaper00051265:F4_hrde-1(tm1200)_upregulated
WBPaper00051305:vit-2(ac3)_downregulated
WBPaper00051558:fog-2(q71)_regulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053295:lin-22(icb38)_downregulated
WBPaper00053388:dauer_regulated_Cluster5
WBPaper00053599:oocyte_vs_mitosis_downregulated
WBPaper00053771:up_at_3h-NaCl
WBPaper00053810:daf-2(e1370)_upregulated
WBPaper00053810:isp-1(qm150)_downregulated
WBPaper00055354:eat-2(ad1116)_downregulated
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Rapamycin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
WBPaper00055354:Rifampicin-Allantoin_downregulated
WBPaper00055354:Rifampicin-Psora_downregulated
WBPaper00055482:Tunicamycin_downregulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056039:efa-6(tm3124)_upregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056167:ifo-1(kc2)_upregulated
WBPaper00056275:P.aeruginosa_downregulated
WBPaper00056284:ints-6(t1903)_upregulated
WBPaper00056443:DietaryRestriction_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056826:SGP_biased
WBPaper00057068:Cadmium_upregulated
WBPaper00057288:Cold_downregulated_transcript
WBPaper00058691:cfp-1(tm6369)_downregulated
WBPaper00058691:set-2(bn129)_downregulated
WBPaper00058691:sin-3(tm1276)_downregulated
WBPaper00058711:wdr-5(ok1417)_upregulated
WBPaper00059117:B.subtilis_downregulated
WBPaper00059253:sucrose_stearic-acid_upregulated
WBPaper00059253:sucrose_upregulated
WBPaper00059356:BAZ-2_SET-6_interacting
WBPaper00059471:EGL-43_interacting
WBPaper00059735:glucose_upregulated_N2
WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
WBPaper00059839:S.maltophilia_regulated
WBPaper00059895:wounding_downregulated
WBPaper00059987:Wounding_downregulated
WBPaper00060084:cco-1(RNAi)_downregulated_lin-40(yth27)
WBPaper00060434:pH4.33_vs_pH6.33_uprgulated
WBPaper00060661:sensory-neuron_enriched
WBPaper00060683:hlh-11(ko1)_upregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060909:atfs-1(cmh15)_upregulated
WBPaper00061203:let-418(n3536)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061341:28C_24h_upregulated
WBPaper00061466:nath-10(icb102)_upregulated
WBPaper00061479:hda-1(ne4752)_upregulated
WBPaper00061479:mep-1(ne4629)_upregulated
WBPaper00061527:dhs-28_22199-acs-14
WBPaper00061530:nhr-49(e2144)_downregulated
WBPaper00061753:csr-1(tor159)_downregulated_20C
WBPaper00061800:miR-85(n4117)_upregulated_20C
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00062587:lsl-1(ljm1)_upregulated
WBPaper00062587:lsl-1(tm4769)_upregulated
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064107:lin-35(n745)_downregulated
WBPaper00064315:mes-3(bn199)_upregulated_PGCs
WBPaper00064769:him-17(me24)_upregulated
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065835:Day11_vs_Day1_downregulated
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00065993:mml-1(RNAi)-neuron_downregulated
WBPaper00065993:mxl-2(RNAi)-neuron_downregulated
WBPaper00066062:xrep-4(lax137)_upregulated
WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
cgc4386_cluster_2_4
cgc4489_group_1
WBPaper00025141:N2_Expressed_Genes
WBPaper00028789:PA14_vs_gacA_downregulated_8hr
WBPaper00028789:PA14_vs_OP50_downregulated_4hr
WBPaper00028789:PA14_vs_OP50_downregulated_8hr
WBPaper00029437:dcr-1_upregulated
WBPaper00029437:rde-4_upregulated
WBPaper00031532:Larva_Pan_Neuronal_Depleted
WBPaper00032948:StarveUp2
WBPaper00035873:dpy-10_regulated
WBPaper00035873:osmotically_regulated
WBPaper00036123:Atrazine_regulated
WBPaper00037695:WC_5-day
WBPaper00039866:ClassComp_daf-19_downregulated
WBPaper00040876:mir-35_downregulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041906:I-3690_vs_OP50_10d
WBPaper00041906:I-4317_vs_OP50_10d
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00042236:flcn-1(ok975)_upregulated
WBPaper00045673:colistin_upregulated
WBPaper00048989:N2_rapamycin_downregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053550:daf-19(m86)_downregulated_3-fold-embryo
WBPaper00055899:nitroguanidine_regulated
WBPaper00057098:SiO2-nanoparticles_downregulated
[cgc5767]:expression_class_E
[cgc5767]:expression_class_ET
[cgc5767]:expression_class_ET_max(122_min)
[cgc5767]:expression_class_E_pi(53_min)
[cgc5767]:expression_class_SE
[cgc5767]:expression_class_SET
[cgc5767]:expression_class_SE_pi(53_min)
[cgc6390]:Cluster_C
InteractionWBInteraction000318673
WBInteraction000441374
WBInteraction000504179
WBInteraction000549983
WBInteraction000549992
WBInteraction000550003
WBInteraction000569074
Map_infoPositivePositive_cloneT07E3Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIII-0.907216
ReferenceWBPaper00012854
WBPaper00059375
MethodGene