WormBase Tree Display for Gene: WBGene00020297
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WBGene00020297 | SMap | S_parent | Sequence | T07A9 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||
Name | CGC_name | nog-1 | Paper_evidence | WBPaper00044873 | |||
Sequence_name | T07A9.9 | ||||||
Molecular_name | T07A9.9 | ||||||
T07A9.9.1 | |||||||
CE17218 | |||||||
T07A9.9.2 | |||||||
T07A9.9.3 | |||||||
Other_name | phi-58 | Person_evidence | WBPerson2582 | ||||
CELE_T07A9.9 | Accession_evidence | NDB | BX284604 | ||||
Public_name | nog-1 | ||||||
DB_info | Database | AceView | gene | 4B149 | |||
WormQTL | gene | WBGene00020297 | |||||
WormFlux | gene | WBGene00020297 | |||||
NDB | locus_tag | CELE_T07A9.9 | |||||
Panther | gene | CAEEL|WormBase=WBGene00020297|UniProtKB=O44411 | |||||
family | PTHR45759 | ||||||
NCBI | gene | 176863 | |||||
RefSeq | protein | NM_171242.6 | |||||
SwissProt | UniProtAcc | O44411 | |||||
UniProt_GCRP | UniProtAcc | O44411 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (3) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | nog | ||||||
Allele (50) | |||||||
Strain | WBStrain00051201 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (17) | |||||||
Contained_in_operon | CEOP4020 | ||||||
Ortholog (44) | |||||||
Paralog | WBGene00010805 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
WBGene00012126 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00015346 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00016145 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Concise_description | T07A9.9 encodes a GTPase with similarity to the mammalian CRFG proteins and Saccharomyces cerevisiae nucleolar NOG1 involved in biogenesis of the 60S ribosomal subunit; in C. elegans, T07A9.9 plays a role in regulating growth, development, lifespan, and fat metabolism; T07A9.9::GFP reporter fusions expressed ubiquitously throughout the life cycle and localizes to the nucleus; in intestinal cells, a T07A9.9 reporter fusion localizes to the nucleolus. | Paper_evidence | WBPaper00044873 | |||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 22 Jan 2015 00:00:00 | ||||||
Automated_description | Predicted to enable GTPase activity and RNA binding activity. Involved in several processes, including determination of adult lifespan; negative regulation of lipid storage; and regulation of reproductive process. Located in nucleolus. Expressed in several structures, including excretory cell; germ cell; intestine; pharynx; and vulva. Is an ortholog of human GTPBP4 (GTP binding protein 4). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | T07A9.9 | |||||
Corresponding_CDS_history | T07A9.9b:wp261 | ||||||
T07A9.9c:wp239 | |||||||
T07A9.9c:wp261 | |||||||
Corresponding_transcript | T07A9.9.1 | ||||||
T07A9.9.2 | |||||||
T07A9.9.3 | |||||||
Other_sequence (82) | |||||||
Associated_feature | WBsf645755 | ||||||
WBsf659874 | |||||||
WBsf659875 | |||||||
WBsf995139 | |||||||
WBsf1016545 | |||||||
WBsf227838 | |||||||
WBsf227839 | |||||||
Experimental_info | RNAi_result (26) | ||||||
Expr_pattern | Expr12046 | ||||||
Expr12047 | |||||||
Expr12048 | |||||||
Expr1029145 | |||||||
Expr1038842 | |||||||
Expr1156319 | |||||||
Expr2014347 | |||||||
Expr2032588 | |||||||
Drives_construct | WBCnstr00020132 | ||||||
WBCnstr00020133 | |||||||
WBCnstr00025236 | |||||||
Construct_product | WBCnstr00020133 | ||||||
WBCnstr00020280 | |||||||
WBCnstr00025236 | |||||||
Microarray_results (45) | |||||||
Expression_cluster (151) | |||||||
Interaction (229) | |||||||
WBProcess | WBbiopr:00000001 | ||||||
WBbiopr:00000121 | |||||||
Map_info | Map | IV | Position | -26.208 | |||
Positive | Positive_clone | T07A9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00028451 | ||||||
WBPaper00038491 | |||||||
WBPaper00044873 | |||||||
WBPaper00049828 | |||||||
WBPaper00055090 | |||||||
WBPaper00057242 | |||||||
WBPaper00065861 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |