WormBase Tree Display for Gene: WBGene00020297
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WBGene00020297 | SMap | S_parent | Sequence | T07A9 | ||
---|---|---|---|---|---|---|
Identity (6) | ||||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | nog | |||||
Allele (50) | ||||||
Strain | WBStrain00051201 | |||||
RNASeq_FPKM (74) | ||||||
GO_annotation (17) | ||||||
Contained_in_operon | CEOP4020 | |||||
Ortholog (44) | ||||||
Paralog (4) | ||||||
Structured_description | Concise_description | T07A9.9 encodes a GTPase with similarity to the mammalian CRFG proteins and Saccharomyces cerevisiae nucleolar NOG1 involved in biogenesis of the 60S ribosomal subunit; in C. elegans, T07A9.9 plays a role in regulating growth, development, lifespan, and fat metabolism; T07A9.9::GFP reporter fusions expressed ubiquitously throughout the life cycle and localizes to the nucleus; in intestinal cells, a T07A9.9 reporter fusion localizes to the nucleolus. | Paper_evidence | WBPaper00044873 | ||
Curator_confirmed | WBPerson1843 | |||||
Date_last_updated | 22 Jan 2015 00:00:00 | |||||
Automated_description | Predicted to enable GTPase activity and RNA binding activity. Involved in several processes, including determination of adult lifespan; negative regulation of lipid storage; and regulation of reproductive process. Located in nucleolus. Expressed in several structures, including excretory cell; germ cell; intestine; pharynx; and vulva. Is an ortholog of human GTPBP4 (GTP binding protein 4). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | T07A9.9 | ||||
Corresponding_CDS_history | T07A9.9b:wp261 | |||||
T07A9.9c:wp239 | ||||||
T07A9.9c:wp261 | ||||||
Corresponding_transcript | T07A9.9.1 | |||||
T07A9.9.2 | ||||||
T07A9.9.3 | ||||||
Other_sequence (82) | ||||||
Associated_feature | WBsf645755 | |||||
WBsf659874 | ||||||
WBsf659875 | ||||||
WBsf995139 | ||||||
WBsf1016545 | ||||||
WBsf227838 | ||||||
WBsf227839 | ||||||
Experimental_info | RNAi_result (26) | |||||
Expr_pattern | Expr12046 | |||||
Expr12047 | ||||||
Expr12048 | ||||||
Expr1029145 | ||||||
Expr1038842 | ||||||
Expr1156319 | ||||||
Expr2014347 | ||||||
Expr2032588 | ||||||
Drives_construct | WBCnstr00020132 | |||||
WBCnstr00020133 | ||||||
WBCnstr00025236 | ||||||
Construct_product | WBCnstr00020133 | |||||
WBCnstr00020280 | ||||||
WBCnstr00025236 | ||||||
Microarray_results (45) | ||||||
Expression_cluster (151) | ||||||
Interaction (229) | ||||||
WBProcess | WBbiopr:00000001 | |||||
WBbiopr:00000121 | ||||||
Map_info | Map | IV | Position | -26.208 | ||
Positive | Positive_clone | T07A9 | Inferred_automatically | From sequence, transcript, pseudogene data | ||
Pseudo_map_position | ||||||
Reference | WBPaper00028451 | |||||
WBPaper00038491 | ||||||
WBPaper00044873 | ||||||
WBPaper00049828 | ||||||
WBPaper00055090 | ||||||
WBPaper00057242 | ||||||
WBPaper00065861 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||
Method | Gene |