WormBase Tree Display for Gene: WBGene00020297
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| WBGene00020297 | SMap | S_parent | Sequence | T07A9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | nog-1 | Paper_evidence | WBPaper00044873 | |||||
| Sequence_name | T07A9.9 | ||||||||
| Molecular_name | T07A9.9 | ||||||||
| T07A9.9.1 | |||||||||
| CE17218 | |||||||||
| T07A9.9.2 | |||||||||
| T07A9.9.3 | |||||||||
| Other_name | phi-58 | Person_evidence | WBPerson2582 | ||||||
| CELE_T07A9.9 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | nog-1 | ||||||||
| DB_info | Database | AceView | gene | 4B149 | |||||
| WormQTL | gene | WBGene00020297 | |||||||
| WormFlux | gene | WBGene00020297 | |||||||
| NDB | locus_tag | CELE_T07A9.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00020297|UniProtKB=O44411 | |||||||
| family | PTHR45759 | ||||||||
| NCBI | gene | 176863 | |||||||
| RefSeq | protein | NM_171242.6 | |||||||
| SwissProt | UniProtAcc | O44411 | |||||||
| UniProt_GCRP | UniProtAcc | O44411 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 17 Mar 2005 13:54:35 | WBPerson2970 | Name_change | Other_name | phi-58 | ||||
| 3 | 28 Jan 2015 11:26:55 | WBPerson2970 | Name_change | CGC_name | nog-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nog | ||||||||
| Allele (50) | |||||||||
| Strain | WBStrain00051201 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (17) | |||||||||
| Contained_in_operon | CEOP4020 | ||||||||
| Ortholog (44) | |||||||||
| Paralog | WBGene00010805 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00012126 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00015346 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00016145 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | T07A9.9 encodes a GTPase with similarity to the mammalian CRFG proteins and Saccharomyces cerevisiae nucleolar NOG1 involved in biogenesis of the 60S ribosomal subunit; in C. elegans, T07A9.9 plays a role in regulating growth, development, lifespan, and fat metabolism; T07A9.9::GFP reporter fusions expressed ubiquitously throughout the life cycle and localizes to the nucleus; in intestinal cells, a T07A9.9 reporter fusion localizes to the nucleolus. | Paper_evidence | WBPaper00044873 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 22 Jan 2015 00:00:00 | ||||||||
| Automated_description | Predicted to enable GTPase activity and RNA binding activity. Involved in several processes, including determination of adult lifespan; negative regulation of lipid storage; and regulation of reproductive process. Located in nucleolus. Expressed in several structures, including excretory cell; germ cell; intestine; pharynx; and vulva. Is an ortholog of human GTPBP4 (GTP binding protein 4). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T07A9.9 | |||||||
| Corresponding_CDS_history | T07A9.9b:wp261 | ||||||||
| T07A9.9c:wp239 | |||||||||
| T07A9.9c:wp261 | |||||||||
| Corresponding_transcript | T07A9.9.1 | ||||||||
| T07A9.9.2 | |||||||||
| T07A9.9.3 | |||||||||
| Other_sequence | Hbac_isotig07188 | ||||||||
| LSC00994_1 | |||||||||
| ES569124.1 | |||||||||
| HG02589 | |||||||||
| FC809906.1 | |||||||||
| JO469366.1 | |||||||||
| OVC03708_1 | |||||||||
| HBC22120_1 | |||||||||
| MAC01638_1 | |||||||||
| Tcir_isotig02561 | |||||||||
| MHC02743_1 | |||||||||
| CBC03018_1 | |||||||||
| GT571461.1 | |||||||||
| PPC00773_1 | |||||||||
| FC815267.1 | |||||||||
| MC01402 | |||||||||
| GR978073.1 | |||||||||
| BMC18678_1 | |||||||||
| BXC05104_1 | |||||||||
| CRC05999_1 | |||||||||
| TSC14778_1 | |||||||||
| Hbac_isotig02750 | |||||||||
| SR00359 | |||||||||
| ACC34684_1 | |||||||||
| ES412287.1 | |||||||||
| Acan_isotig19805 | |||||||||
| BMC00295_1 | |||||||||
| DAC01331_1 | |||||||||
| MA00806 | |||||||||
| GRC02701_1 | |||||||||
| HSC00266_1 | |||||||||
| CSC02164_1 | |||||||||
| PTC01181_1 | |||||||||
| CJC00059_1 | |||||||||
| FC814881.1 | |||||||||
| BXC00346_1 | |||||||||
| JI167406.1 | |||||||||
| FD516184.1 | |||||||||
| Dviv_isotig24855 | |||||||||
| PT01776 | |||||||||
| EX501033.1 | |||||||||
| CK850386.1 | |||||||||
| RS05942 | |||||||||
| CRC04289_1 | |||||||||
| EX501507.1 | |||||||||
| Name_isotig02611 | |||||||||
| CD455689.1 | |||||||||
| BMC01654_1 | |||||||||
| BMC00956_1 | |||||||||
| MA02320 | |||||||||
| CR08382 | |||||||||
| MH00922 | |||||||||
| Oden_isotig18989 | |||||||||
| CRC01701_1 | |||||||||
| GR13504 | |||||||||
| AI670479.1 | |||||||||
| CBC16106_1 | |||||||||
| WBC01174_1 | |||||||||
| EX557303.1 | |||||||||
| MCC00519_1 | |||||||||
| DN558046.1 | |||||||||
| MAC00249_1 | |||||||||
| Tcol_isotig00086 | |||||||||
| DA03809 | |||||||||
| CJC05860_1 | |||||||||
| WBC01276_1 | |||||||||
| HGC01355_1 | |||||||||
| TSC07441_1 | |||||||||
| Tcir_isotig02560 | |||||||||
| BE132560.1 | |||||||||
| EX501925.1 | |||||||||
| BM01519 | |||||||||
| SC01427 | |||||||||
| SRC00212_1 | |||||||||
| CBC04881_1 | |||||||||
| ACC40389_1 | |||||||||
| RSC02406_1 | |||||||||
| HS00665 | |||||||||
| CD455818.1 | |||||||||
| EX566122.1 | |||||||||
| CR02527 | |||||||||
| BMC11783_1 | |||||||||
| Associated_feature | WBsf645755 | ||||||||
| WBsf659874 | |||||||||
| WBsf659875 | |||||||||
| WBsf995139 | |||||||||
| WBsf1016545 | |||||||||
| WBsf227838 | |||||||||
| WBsf227839 | |||||||||
| Experimental_info | RNAi_result (26) | ||||||||
| Expr_pattern | Expr12046 | ||||||||
| Expr12047 | |||||||||
| Expr12048 | |||||||||
| Expr1029145 | |||||||||
| Expr1038842 | |||||||||
| Expr1156319 | |||||||||
| Expr2014347 | |||||||||
| Expr2032588 | |||||||||
| Drives_construct | WBCnstr00020132 | ||||||||
| WBCnstr00020133 | |||||||||
| WBCnstr00025236 | |||||||||
| Construct_product | WBCnstr00020133 | ||||||||
| WBCnstr00020280 | |||||||||
| WBCnstr00025236 | |||||||||
| Microarray_results (45) | |||||||||
| Expression_cluster (151) | |||||||||
| Interaction (229) | |||||||||
| WBProcess | WBbiopr:00000001 | ||||||||
| WBbiopr:00000121 | |||||||||
| Map_info | Map | IV | Position | -26.208 | |||||
| Positive | Positive_clone | T07A9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00028451 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00044873 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00057242 | |||||||||
| WBPaper00065861 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
