WormBase Tree Display for Gene: WBGene00020297

WBGene00020297 SMap: S_parent: Sequence: T07A9
  Identity: Version: 3
    Name: CGC_name: nog-1 Paper_evidence: WBPaper00044873
      Sequence_name: T07A9.9
      Molecular_name: T07A9.9
        T07A9.9.1
        CE17218
        T07A9.9.2
        T07A9.9.3
      Other_name: phi-58 Person_evidence: WBPerson2582
        CELE_T07A9.9 Accession_evidence: NDB BX284604
      Public_name: nog-1
    DB_info: Database: AceView gene 4B149
        WormQTL gene WBGene00020297
        WormFlux gene WBGene00020297
        NDB locus_tag CELE_T07A9.9
        Panther gene CAEEL|WormBase=WBGene00020297|UniProtKB=O44411
          family PTHR45759
        NCBI gene 176863
        RefSeq protein NM_171242.6
        SwissProt UniProtAcc O44411
        UniProt_GCRP UniProtAcc O44411
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:02 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 17 Mar 2005 13:54:35 WBPerson2970 Name_change: Other_name: phi-58
        3 28 Jan 2015 11:26:55 WBPerson2970 Name_change: CGC_name: nog-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nog
    Allele (50)
    Strain: WBStrain00051201
    RNASeq_FPKM (74)
    GO_annotation (17)
    Contained_in_operon: CEOP4020
    Ortholog: WBGene00034251 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00072685 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00139286 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00137184 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00064524 Caenorhabditis remanei From_analysis: TreeFam
            WormBase-Compara
      WBGene00091853 Pristionchus pacificus From_analysis: OMA
            WormBase-Compara
      WBGene00225894 Brugia malayi From_analysis: WormBase-Compara
      WBGene00269072 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g10725 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g13229 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g14291 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g2669 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g22234 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g6396 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g13996 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g20417 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g10932 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g18805 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g8309 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g16194 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00444.g10930 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_02823.g17544 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-nog-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g10694 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_01688.g22532 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_12153 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_016135 Caenorhabditis remanei From_analysis: WormBase-Compara
      GCK72_016240 Caenorhabditis remanei From_analysis: WormBase-Compara
      GCK72_016241 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g03335 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g11382 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_40019800 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIV_pilon.g9500 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00086043 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00241685 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00241700 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00258010 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00293000 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000006014 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0028473 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-030131-5982 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:21535 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1916487 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:620783 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Paralog: WBGene00010805 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00012126 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00015346 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00016145 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Concise_description: T07A9.9 encodes a GTPase with similarity to the mammalian CRFG proteins and Saccharomyces cerevisiae nucleolar NOG1 involved in biogenesis of the 60S ribosomal subunit; in C. elegans, T07A9.9 plays a role in regulating growth, development, lifespan, and fat metabolism; T07A9.9::GFP reporter fusions expressed ubiquitously throughout the life cycle and localizes to the nucleus; in intestinal cells, a T07A9.9 reporter fusion localizes to the nucleolus. Paper_evidence: WBPaper00044873
          Curator_confirmed: WBPerson1843
          Date_last_updated: 22 Jan 2015 00:00:00
      Automated_description: Predicted to enable GTPase activity and RNA binding activity. Involved in several processes, including determination of adult lifespan; negative regulation of lipid storage; and regulation of reproductive process. Located in nucleolus. Expressed in several structures, including excretory cell; germ cell; intestine; pharynx; and vulva. Is an ortholog of human GTPBP4 (GTP binding protein 4). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T07A9.9
    Corresponding_CDS_history: T07A9.9b:wp261
      T07A9.9c:wp239
      T07A9.9c:wp261
    Corresponding_transcript: T07A9.9.1
      T07A9.9.2
      T07A9.9.3
    Other_sequence (82)
    Associated_feature: WBsf645755
      WBsf659874
      WBsf659875
      WBsf995139
      WBsf1016545
      WBsf227838
      WBsf227839
  Experimental_info: RNAi_result (26)
    Expr_pattern: Expr12046
      Expr12047
      Expr12048
      Expr1029145
      Expr1038842
      Expr1156319
      Expr2014347
      Expr2032588
    Drives_construct: WBCnstr00020132
      WBCnstr00020133
      WBCnstr00025236
    Construct_product: WBCnstr00020133
      WBCnstr00020280
      WBCnstr00025236
    Microarray_results (45)
    Expression_cluster (151)
    Interaction (229)
    WBProcess: WBbiopr:00000001
      WBbiopr:00000121
  Map_info: Map: IV Position: -26.208
    Positive: Positive_clone: T07A9 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00028451
    WBPaper00038491
    WBPaper00044873
    WBPaper00049828
    WBPaper00055090
    WBPaper00057242
    WBPaper00065861
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene