WormBase Tree Display for Gene: WBGene00020093

WBGene00020093 SMap: S_parent: Sequence: R144
  Identity: Version: 1
    Name: Sequence_name: R144.3
      Molecular_name: R144.3a
        R144.3a.1
        CE41692
        R144.3b
        CE39271
        R144.3b.1
      Other_name: CELE_R144.3 Accession_evidence: NDB BX284603
      Public_name: R144.3
    DB_info: Database: AceView gene 3G113
            3G115
        WormQTL gene WBGene00020093
        WormFlux gene WBGene00020093
        NDB locus_tag CELE_R144.3
        Panther gene CAEEL|WormBase=WBGene00020093|UniProtKB=F5GU47
          family PTHR12901
        NCBI gene 187900
        RefSeq protein NM_001267994.3
            NM_001382857.2
        TrEMBL UniProtAcc F5GU47
            H2KZ21
        UniProt_GCRP UniProtAcc F5GU47
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:02 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (17)
    Strain: WBStrain00032834
    RNASeq_FPKM (74)
    GO_annotation: 00008648
    Contained_in_operon: CEOP3256
    Ortholog (23)
    Paralog: WBGene00044648 Caenorhabditis elegans From_analysis: Panther
    Structured_description: Automated_description: Predicted to be located in mitochondrion. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: R144.3a
      R144.3b
    Corresponding_CDS_history: R144.3:wp142
      R144.3:wp150
      R144.3:wp183
    Corresponding_transcript: R144.3a.1
      R144.3b.1
    Associated_feature: WBsf978368
      WBsf1014829
      WBsf224839
      WBsf224840
    Transcription_factor: WBTranscriptionFactor000843
  Experimental_info: RNAi_result: WBRNAi00087235 Inferred_automatically: RNAi_primary
      WBRNAi00085241 Inferred_automatically: RNAi_primary
      WBRNAi00068053 Inferred_automatically: RNAi_primary
      WBRNAi00005600 Inferred_automatically: RNAi_primary
      WBRNAi00051957 Inferred_automatically: RNAi_primary
      WBRNAi00081676 Inferred_automatically: RNAi_primary
      WBRNAi00026123 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr10421
      Expr10422
      Expr10423
      Expr1025162
      Expr1038732
      Expr1155603
      Expr2005649
      Expr2023865
    Drives_construct: WBCnstr00015317
      WBCnstr00015318
      WBCnstr00025377
    Construct_product: WBCnstr00025377
    Microarray_results (18)
    Expression_cluster: WBPaper00040221:DAF-12_target_ALF4
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045521:Gender_Neutral
      WBPaper00045571:germline-ablation_downregulated
      WBPaper00046012:tdp-1(ok803)_upregulated
      WBPaper00046338:intestine_unique
      WBPaper00048926:miaserin_upregulated_adult-day5
      WBPaper00048988:neuron_expressed
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00050344:PLM-neuron_enriched
      WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051558:aging_regulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_downregulated_L1_SMARTseq
      WBPaper00053321:PGCs_enriched_NuGen
      WBPaper00053388:dauer_regulated_Cluster2
      WBPaper00054493:hpl-2(tm1489)_downregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00057288:iff-1(RNAi)_upregulated_transcript
      WBPaper00058691:sin-3(tm1276)_downregulated
      WBPaper00059763:neuron_expressed
      WBPaper00060100:SiNP_downregulated_mRNA
      WBPaper00061007:HB101_downregulated
      WBPaper00061007:S.aquatilis_downregulated
      WBPaper00061572:oleic-acid-specific_mating_upregulated
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00064005:starvation_upregulated_N2_mRNA
      WBPaper00064716:paraquat_upregulated
      WBPaper00065096:25C_vs_20C_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066038:mip-1(how5)_downregulated
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4489_group_2
      WBPaper00026980:intestine_enriched
      WBPaper00041606:CE_B.thuringiensis-DB27_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(23_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MDE
      [cgc5767]:expression_class_MD_pd(PC32)
      [cgc5767]:expression_class_ME
    SAGE_tag: SAGE:cttgttgtgtggaaaga Strand: Sense
        Unambiguously_mapped
      SAGE:aaaaatcctaataaacg Strand: Sense
        Unambiguously_mapped
      SAGE:tcaaattgtt Strand: Antisense
      SAGE:aaaaatccta Strand: Sense
        Unambiguously_mapped
      SAGE:tcaaagttacggtaacc Strand: Sense
        Unambiguously_mapped
      SAGE:aaaattaaca Strand: Antisense
      SAGE:cacccaaatc Strand: Antisense
      SAGE:gctgagtatt Strand: Antisense
      SAGE:cttgttgtgt Strand: Sense
        Unambiguously_mapped
      SAGE:gctgagtattttctttt Strand: Antisense
    Interaction (81)
  Map_info: Positive: Positive_clone: R144 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: III -2.2185
  Method: Gene