WormBase Tree Display for Gene: WBGene00020080

WBGene00020080 SMap: S_parent: Sequence: R52
  Identity: Version: 3
    Name: CGC_name: math-37 Person_evidence: WBPerson655
      Sequence_name: R52.9
      Molecular_name: R52.9
        R52.9.1
        CE45905
      Other_name: CELE_R52.9 Accession_evidence: NDB BX284602
      Public_name: math-37
    DB_info: Database: AceView gene 2C406
        WormQTL gene WBGene00020080
        WormFlux gene WBGene00020080
        NDB locus_tag CELE_R52.9
        Panther gene CAEEL|WormBase=WBGene00020080|UniProtKB=F3NWW4
          family PTHR46308
        NCBI gene 187883
        RefSeq protein NM_061787.5
        TREEFAM TREEFAM_ID TF322050
        TrEMBL UniProtAcc F3NWW4
        UniProt_GCRP UniProtAcc F3NWW4
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:02 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 12 Dec 2005 17:54:47 WBPerson2970 Name_change: CGC_name: math-37
        3 08 Jul 2011 16:52:13 WBPerson2970 Event: Acquires_merge: WBGene00020079
      Acquires_merge: WBGene00020079
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: math
    Allele (182)
    RNASeq_FPKM (74)
    Contained_in_operon: CEOP2684
    Ortholog (18)
    Paralog (85)
    Structured_description: Automated_description: Enriched in AFD and intestine based on tiling array and RNA-seq studies. Is affected by several genes including daf-2; glp-1; and hsf-1 based on microarray; tiling array; and RNA-seq studies. Is affected by seventeen chemicals including hydrogen sulfide; methylmercuric chloride; and Tunicamycin based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: MATH/TRAF domain; MATH domain; and TRAF-like. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: R52.9
    Corresponding_CDS_history: R52.9:wp125
      R52.9:wp153
      R52.9:wp225
    Corresponding_transcript: R52.9.1
    Associated_feature: WBsf222746
  Experimental_info: RNAi_result: WBRNAi00052035 Inferred_automatically: RNAi_primary
      WBRNAi00017910 Inferred_automatically: RNAi_primary
      WBRNAi00017909 Inferred_automatically: RNAi_primary
      WBRNAi00052034 Inferred_automatically: RNAi_primary
      WBRNAi00034966 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1027975
      Expr1038721
      Expr1155670
      Expr2013409
      Expr2031643
    Drives_construct: WBCnstr00037823
    Construct_product: WBCnstr00037823
    Microarray_results (24)
    Expression_cluster (172)
    Interaction: WBInteraction000163932
      WBInteraction000264712
      WBInteraction000280339
      WBInteraction000307396
      WBInteraction000311700
      WBInteraction000330596
      WBInteraction000351644
      WBInteraction000357643
      WBInteraction000367826
  Map_info: Map: II Position: -13.8519 Error: 0.001604
    Positive: Positive_clone: R52 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene