WormBase Tree Display for Gene: WBGene00020080
expand all nodes | collapse all nodes | view schema
WBGene00020080 | SMap | S_parent | Sequence | R52 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||
Name | CGC_name | math-37 | Person_evidence | WBPerson655 | |||
Sequence_name | R52.9 | ||||||
Molecular_name | R52.9 | ||||||
R52.9.1 | |||||||
CE45905 | |||||||
Other_name | CELE_R52.9 | Accession_evidence | NDB | BX284602 | |||
Public_name | math-37 | ||||||
DB_info | Database | AceView | gene | 2C406 | |||
WormQTL | gene | WBGene00020080 | |||||
WormFlux | gene | WBGene00020080 | |||||
NDB | locus_tag | CELE_R52.9 | |||||
Panther | gene | CAEEL|WormBase=WBGene00020080|UniProtKB=F3NWW4 | |||||
family | PTHR46308 | ||||||
NCBI | gene | 187883 | |||||
RefSeq | protein | NM_061787.5 | |||||
TREEFAM | TREEFAM_ID | TF322050 | |||||
TrEMBL | UniProtAcc | F3NWW4 | |||||
UniProt_GCRP | UniProtAcc | F3NWW4 | |||||
Species | Caenorhabditis elegans | ||||||
History (2) | |||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | math | ||||||
Allele (182) | |||||||
RNASeq_FPKM (74) | |||||||
Contained_in_operon | CEOP2684 | ||||||
Ortholog (18) | |||||||
Paralog (85) | |||||||
Structured_description | Automated_description | Enriched in AFD and intestine based on tiling array and RNA-seq studies. Is affected by several genes including daf-2; glp-1; and hsf-1 based on microarray; tiling array; and RNA-seq studies. Is affected by seventeen chemicals including hydrogen sulfide; methylmercuric chloride; and Tunicamycin based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: MATH/TRAF domain; MATH domain; and TRAF-like. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | R52.9 | |||||
Corresponding_CDS_history | R52.9:wp125 | ||||||
R52.9:wp153 | |||||||
R52.9:wp225 | |||||||
Corresponding_transcript | R52.9.1 | ||||||
Associated_feature | WBsf222746 | ||||||
Experimental_info | RNAi_result | WBRNAi00052035 | Inferred_automatically | RNAi_primary | |||
WBRNAi00017910 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00017909 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00052034 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00034966 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1027975 | ||||||
Expr1038721 | |||||||
Expr1155670 | |||||||
Expr2013409 | |||||||
Expr2031643 | |||||||
Drives_construct | WBCnstr00037823 | ||||||
Construct_product | WBCnstr00037823 | ||||||
Microarray_results (24) | |||||||
Expression_cluster (172) | |||||||
Interaction | WBInteraction000163932 | ||||||
WBInteraction000264712 | |||||||
WBInteraction000280339 | |||||||
WBInteraction000307396 | |||||||
WBInteraction000311700 | |||||||
WBInteraction000330596 | |||||||
WBInteraction000351644 | |||||||
WBInteraction000357643 | |||||||
WBInteraction000367826 | |||||||
Map_info | Map | II | Position | -13.8519 | Error | 0.001604 | |
Positive | Positive_clone | R52 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |