WormBase Tree Display for Gene: WBGene00020049
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| WBGene00020049 | SMap | S_parent | Sequence | R13A5 | |||
|---|---|---|---|---|---|---|---|
| Identity (6) | |||||||
| Gene_info | Biotype | SO:0001217 | |||||
| Gene_class | ttr | ||||||
| Allele (12) | |||||||
| Strain | WBStrain00002546 | ||||||
| WBStrain00002210 | |||||||
| RNASeq_FPKM (74) | |||||||
| GO_annotation | 00089798 | ||||||
| 00124774 | |||||||
| Ortholog (29) | |||||||
| Paralog (62) | |||||||
| Structured_description | Concise_description | R13A5.6 encodes a protein containing a predicted signal sequence followed by a transthyretin-like domain; the product of R13A5.6 belongs to a family of apparently nematode-specific proteins whose function is not yet known; an R13A5.6::GFP promoter fusion directs expression outside of the nervous system. | Paper_evidence | WBPaper00002969 | |||
| WBPaper00028592 | |||||||
| Curator_confirmed | WBPerson1843 | ||||||
| Date_last_updated | 04 Sep 2007 00:00:00 | ||||||
| Automated_description | Predicted to be located in cell surface and extracellular region. | Paper_evidence | WBPaper00065943 | ||||
| Curator_confirmed (2) | |||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
| Molecular_info | Corresponding_CDS | R13A5.6 | |||||
| Corresponding_transcript | R13A5.6.1 | ||||||
| Other_sequence (119) | |||||||
| Associated_feature | WBsf227000 | ||||||
| Experimental_info | RNAi_result | WBRNAi00051893 | Inferred_automatically | RNAi_primary | |||
| WBRNAi00017820 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00034918 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00006730 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Chronogram1168 | ||||||
| Expr4313 | |||||||
| Expr6521 | |||||||
| Expr6522 | |||||||
| Expr1017010 | |||||||
| Expr1155549 | |||||||
| Drives_construct | WBCnstr00002952 | ||||||
| WBCnstr00004469 | |||||||
| WBCnstr00011912 | |||||||
| WBCnstr00025402 | |||||||
| Construct_product | WBCnstr00025402 | ||||||
| Microarray_results (18) | |||||||
| Expression_cluster (202) | |||||||
| Interaction | WBInteraction000276290 | ||||||
| WBInteraction000346034 | |||||||
| Map_info | Map | III | Position | -0.667512 | Error | 0.000354 | |
| Positive | Positive_clone | R13A5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
| Pseudo_map_position | |||||||
| Reference | WBPaper00002969 | ||||||
| WBPaper00028592 | |||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
| Method | Gene |
