WormBase Tree Display for Gene: WBGene00020047

WBGene00020047 SMap: S_parent: Sequence: R13A5
  Identity: Version: 2
    Name: CGC_name: ttr-32
      Sequence_name: R13A5.3
      Molecular_name: R13A5.3
        R13A5.3.1
        CE01375
        R13A5.3.2
      Other_name: CELE_R13A5.3 Accession_evidence: NDB BX284603
      Public_name: ttr-32
    DB_info: Database: AceView gene 3I655
        WormQTL gene WBGene00020047
        WormFlux gene WBGene00020047
        NDB locus_tag CELE_R13A5.3
        Panther gene CAEEL|WormBase=WBGene00020047|UniProtKB=Q95Y92
          family PTHR21700
        NCBI gene 187854
        RefSeq protein NM_066257.2
        TREEFAM TREEFAM_ID TF315773
        TrEMBL UniProtAcc Q95Y92
        UniProt_GCRP UniProtAcc Q95Y92
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:02 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 20 Sep 2007 11:48:01 WBPerson2970 Name_change: CGC_name: ttr-32
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ttr
    Allele (19)
    RNASeq_FPKM (74)
    GO_annotation: 00089797
      00124767
    Ortholog: WBGene00030802 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00077373 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00154895 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00119026 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
      WBGene00115339 Pristionchus pacificus From_analysis: Inparanoid_8
      CBOVI.g5597 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g4508 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g17056 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g18679 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g22382 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g20964 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g3329 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g3225 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g19538 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g20945 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g5908 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00001.g43 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-ttr-32 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g19569 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00853.g16117 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_07333 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_008999 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g12164 Oscheius tipulae From_analysis: WormBase-Compara
      Sp34_30048400 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g8183 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00304361 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00287535 Trichuris muris From_analysis: WormBase-Compara
    Paralog (62)
    Structured_description: Concise_description: R13A5.3 encodes a protein containing a predicted signal sequence followed by a transthyretin-like domain; although the product of R13A5.3 belongs to a family of apparently nematode-specific proteins whose function is not yet known, loss of R13A5.3 activity via RNAi has been reported to result in hyperactive locomotion. Paper_evidence: WBPaper00002969
            WBPaper00005487
          Curator_confirmed: WBPerson1843
          Date_last_updated: 04 Sep 2007 00:00:00
      Automated_description: Predicted to be located in cell surface and extracellular region. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: R13A5.3
    Corresponding_transcript: R13A5.3.1
      R13A5.3.2
    Other_sequence (17)
    Associated_feature: WBsf645347
      WBsf225266
  Experimental_info: RNAi_result: WBRNAi00062788 Inferred_automatically: RNAi_primary
      WBRNAi00005677 Inferred_automatically: RNAi_primary
      WBRNAi00034916 Inferred_automatically: RNAi_primary
      WBRNAi00017818 Inferred_automatically: RNAi_primary
      WBRNAi00051889 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1017122
      Expr1155546
      Expr2017598
      Expr2035737
    Drives_construct: WBCnstr00025404
    Construct_product: WBCnstr00025404
    Microarray_results (19)
    Expression_cluster (190)
    Interaction (118)
  Map_info: Map: III Position: -0.666614 Error: 0.000371
    Positive: Positive_clone: R13A5 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00002969
    WBPaper00005487
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene