WormBase Tree Display for Gene: WBGene00019893

WBGene00019893 SMap: S_parent: Sequence: R05F9
  Identity: Version: 2
    Name: CGC_name: sgt-1 Person_evidence: WBPerson3207
      Sequence_name: R05F9.10
      Molecular_name: R05F9.10
        R05F9.10.1
        CE04813
      Other_name: CELE_R05F9.10 Accession_evidence: NDB BX284602
      Public_name: sgt-1
    DB_info: Database: AceView gene 2F192
        WormQTL gene WBGene00019893
        WormFlux gene WBGene00019893
        NDB locus_tag CELE_R05F9.10
        Panther gene CAEEL|WormBase=WBGene00019893|UniProtKB=Q21746
          family PTHR45831
        NCBI gene 173846
        RefSeq protein NM_062492.8
        TREEFAM TREEFAM_ID TF313092
        TrEMBL UniProtAcc Q21746
        UniProt_GCRP UniProtAcc Q21746
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:02 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 18 Jul 2005 13:34:00 WBPerson2970 Name_change: CGC_name: sgt-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: sgt
    Allele (24)
    Strain: WBStrain00031759
    RNASeq_FPKM (74)
    GO_annotation (27)
    Contained_in_operon: CEOP2140
    Ortholog (47)
    Paralog: WBGene00000500 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00006781 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00015916 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00016375 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00019983 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable molecular adaptor activity. Predicted to be involved in post-translational protein targeting to endoplasmic reticulum membrane. Predicted to be located in membrane. Predicted to be part of TRC complex. Is an ortholog of human SGTA (small glutamine rich tetratricopeptide repeat co-chaperone alpha) and SGTB (small glutamine rich tetratricopeptide repeat co-chaperone beta). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: R05F9.10
    Corresponding_transcript: R05F9.10.1
    Other_sequence (95)
    Associated_feature: WBsf665491
      WBsf665492
      WBsf981192
      WBsf222970
  Experimental_info: RNAi_result (22)
    Expr_pattern: Chronogram1750
      Expr6460
      Expr1025882
      Expr1038631
      Expr1155003
      Expr2015805
      Expr2034038
    Drives_construct: WBCnstr00002520
      WBCnstr00025516
    Construct_product: WBCnstr00025516
    Microarray_results (20)
    Expression_cluster: WBPaper00026640:Development_Group_IV
      WBPaper00028360:Phospho-Sulfo-Modified_proteins
      WBPaper00028451:Low_abundance_spermatogenesis_enriched
      WBPaper00029359_1217
      WBPaper00029359_1280
      WBPaper00029359_1353
      WBPaper00029359_1444
      WBPaper00029359_1504
      WBPaper00029359_1538
      WBPaper00029359_1548
      WBPaper00029359_1604
      WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00031674:feh-1(gb561)(RNAi)_upregulated
      WBPaper00032528:L3_enriched
      WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00036375:enriched_in_PVD_OLL
      WBPaper00037047:aging_accelerated_insoluble_protein
      WBPaper00037047:insoluble_protein
      WBPaper00037055:DAF-16_binding_DNA
      WBPaper00038118:stress_upregulated_N2
      WBPaper00038289:oocyte_protein
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00044501:gld-1_let-7_regulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044746:aging_downregulated_HeatShock
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045521:Gender_Neutral
      WBPaper00045571:germline-ablation_downregulated
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_expressed
      WBPaper00049498:npr-1(ur89)_regulated_6
      WBPaper00050199:hsf-1(ok600)_downregulated
      WBPaper00050344:PLM-neuron_enriched
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:starvation_regulated_LowSalt
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051245:body-wall-muscle_cytoplasm_expressed
      WBPaper00051245:cytoplasm_specific
      WBPaper00051245:epidermis_cytoplasm_expressed
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00051245:intestine_nucleus_expressed
      WBPaper00051245:pharyngeal-muscle_cytoplasm_expressed
      WBPaper00051555:atm-1(gk186)_regulated_protein
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053302:zidovudine_24h_regulated
      WBPaper00053388:dauer_regulated_Cluster1
      WBPaper00053713:Pheromone-induced_postdauer_vs_control_upregulated
      WBPaper00053713:Starvation-induced_postdauer_vs_control_downregulated
      WBPaper00053814:25C_downregulated_OP50
      WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
      WBPaper00055565:AVK_enriched
      WBPaper00055648:germline_expressed
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056139:soil-microbiota_downregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00056809:smn-1(ok355)_downregulated
      WBPaper00057041:unc-70(cas983)_upregulated
      WBPaper00057154:HeatShock_downregulated_miRNA-target
      WBPaper00057154:HeatShock_upregulated_mRNA
      WBPaper00057288:iff-1(RNAi)_downregulated_transcript
      WBPaper00059174:MEG-3_interacting
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00059440:LAG-1_activated_4hr-auxin
      WBPaper00059471:EGL-43_interacting
      WBPaper00060014:set-2(zr2012)_upregulated
      WBPaper00060100:SiNP_upregulated_mRNA
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00061341:28C_24h_downregulated
      WBPaper00061377:MYRF-1_interacting
      WBPaper00061527:tars-1-AFFX-r2-3026-5_at
      WBPaper00061527:unc-116_2109-zfp-1_3976
      WBPaper00061651:I3_enriched
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062669:extracellular-vesicle_protein
      WBPaper00064071:NHR-49_interacting
      WBPaper00064315:mes-4(bn73)_downregulated_EGCs
      WBPaper00064716:paraquat_upregulated
      WBPaper00064871:hypoxia_upregulated_F2
      WBPaper00065120:body-muscle-transcriptome
      WBPaper00065158:25C_vs_15C_upregulated_AFD
      WBPaper00065158:AFD_depleted
      WBPaper00065749:Heat-Shock_upregulated_endu-2(tm4977)
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4489_group_3
      WBPaper00025032:cluster_28
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026952:class_A
      WBPaper00031003:24hr_muscle_enriched
      WBPaper00031003:total_muscle_enriched
      WBPaper00031060:2-deoxy-D-glucose_downregulated
      WBPaper00031252:AIN-2_IP_enriched
      WBPaper00031832:slr-2_regulated
      WBPaper00032948:FedUp
      WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
      WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.5
      WBPaper00040821:Au-NP_regulated
      WBPaper00041002:HF_11d_2.0mM_Up
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00042331:a-SWCNTs_downregulated
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      [cgc5767]:cluster_6
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_MD
      [cgc5767]:expression_class_MD_pd(41_min)
      [cgc5767]:expression_class_SM
      [cgc5767]:expression_class_SMD
      [cgc5976]:class_2
    Interaction (528)
  Map_info: Map: II Position: -2.92739 Error: 0.004111
    Positive: Positive_clone: R05F9 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 5328
        5556
    Pseudo_map_position
  Reference: WBPaper00005371
    WBPaper00028360
    WBPaper00031418
    WBPaper00034672
    WBPaper00038491
    WBPaper00040294
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene