WormBase Tree Display for Gene: WBGene00019767
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| WBGene00019767 | SMap | S_parent | Sequence | M04F3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | rpa-2 | |||||||
| Sequence_name | M04F3.1 | ||||||||
| Molecular_name | M04F3.1 | ||||||||
| M04F3.1.1 | |||||||||
| CE12414 | |||||||||
| Other_name | CeRPA | Paper_evidence | WBPaper00025014 | ||||||
| WBPaper00031956 | |||||||||
| CeRPA32 | Paper_evidence | WBPaper00040684 | |||||||
| CELE_M04F3.1 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | rpa-2 | ||||||||
| DB_info | Database | AceView | gene | 1F339 | |||||
| WormQTL | gene | WBGene00019767 | |||||||
| WormFlux | gene | WBGene00019767 | |||||||
| NDB | locus_tag | CELE_M04F3.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00019767|UniProtKB=Q95Y97 | |||||||
| family | PTHR13989 | ||||||||
| NCBI | gene | 172092 | |||||||
| RefSeq | protein | NM_059045.8 | |||||||
| TREEFAM | TREEFAM_ID | TF352968 | |||||||
| TrEMBL | UniProtAcc | Q95Y97 | |||||||
| UniProt_GCRP | UniProtAcc | Q95Y97 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 07 Feb 2007 08:58:58 | WBPerson2970 | Name_change | CGC_name | rpa-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rpa | ||||||||
| Allele (14) | |||||||||
| Strain | WBStrain00035259 | ||||||||
| WBStrain00036377 | |||||||||
| WBStrain00034799 | |||||||||
| WBStrain00051041 | |||||||||
| WBStrain00051036 | |||||||||
| WBStrain00051034 | |||||||||
| WBStrain00051035 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (23) | |||||||||
| Ortholog (22) | |||||||||
| Paralog | WBGene00019079 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Structured_description | Concise_description | rpa-2 encodes the C. elegans homolog of the medium subunit of replication protein A (RPA); by homology RPA-2 is predicted to function in several DNA metabolic processes, including recombination, repair, and replication, as well as cell cycle and DNA damage checkpoints; RPA-2 physically interacts with RPA-1, the RPA large subunit, in vivo. | Paper_evidence | WBPaper00025138 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 05 Aug 2012 00:00:00 | ||||||||
| Automated_description | Enables enzyme binding activity. Predicted to be involved in DNA replication; double-strand break repair via homologous recombination; and nucleotide-excision repair. Predicted to be located in chromosome, telomeric region and site of double-strand break. Predicted to be part of DNA replication factor A complex. Expressed in pharyngeal neurons and seam cell. Is an ortholog of human RPA2 (replication protein A2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | M04F3.1 | |||||||
| Corresponding_transcript | M04F3.1.1 | ||||||||
| Other_sequence | CGC00518_1 | ||||||||
| CRC01239_1 | |||||||||
| CR09300 | |||||||||
| CR09179 | |||||||||
| CBC03124_1 | |||||||||
| CJC02916_1 | |||||||||
| CR02657 | |||||||||
| Associated_feature | WBsf643240 | ||||||||
| WBsf643241 | |||||||||
| WBsf654782 | |||||||||
| WBsf656251 | |||||||||
| WBsf981006 | |||||||||
| WBsf983484 | |||||||||
| WBsf983485 | |||||||||
| WBsf217575 | |||||||||
| Experimental_info | RNAi_result (18) | ||||||||
| Expr_pattern | Chronogram2029 | ||||||||
| Expr7623 | |||||||||
| Expr1026249 | |||||||||
| Expr1038551 | |||||||||
| Expr1154609 | |||||||||
| Expr1200320 | |||||||||
| Expr2015415 | |||||||||
| Expr2033650 | |||||||||
| Drives_construct | WBCnstr00001067 | ||||||||
| WBCnstr00012768 | |||||||||
| WBCnstr00025609 | |||||||||
| Construct_product | WBCnstr00025609 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (154) | |||||||||
| Interaction (266) | |||||||||
| Map_info | Map | I | Position | -0.738345 | Error | 0.002057 | |||
| Positive | Positive_clone | M04F3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005736 | ||||||||
| WBPaper00025014 | |||||||||
| WBPaper00025138 | |||||||||
| WBPaper00027740 | |||||||||
| WBPaper00031956 | |||||||||
| WBPaper00033090 | |||||||||
| WBPaper00033449 | |||||||||
| WBPaper00037751 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00040684 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00060907 | |||||||||
| WBPaper00064312 | |||||||||
| WBPaper00065792 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
