WormBase Tree Display for Gene: WBGene00019735

WBGene00019735 SMap: S_parent: Sequence: M02F4
  Identity: Version: 1
    Name: Sequence_name: M02F4.1
      Molecular_name: M02F4.1
        M02F4.1.1
        CE53624
      Other_name: CELE_M02F4.1 Accession_evidence: NDB BX284606
      Public_name: M02F4.1
    DB_info: Database: AceView gene XD646
        WormQTL gene WBGene00019735
        WormFlux gene WBGene00019735
        NDB locus_tag CELE_M02F4.1
        Panther gene CAEEL|WormBase=WBGene00019735|UniProtKB=Q21472
          family PTHR21449
        NCBI gene 187400
        RefSeq protein NM_001374984.1
        TREEFAM TREEFAM_ID TF320046
        TrEMBL UniProtAcc Q21472
        UniProt_GCRP UniProtAcc Q21472
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:02 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (34)
    RNASeq_FPKM (74)
    Ortholog: WBGene00157244 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00121066 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00058749 Caenorhabditis remanei From_analysis: TreeFam
    Paralog: WBGene00010066 Caenorhabditis elegans From_analysis: Panther
      WBGene00011010 Caenorhabditis elegans From_analysis: Panther
      WBGene00011011 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00013659 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00021656 Caenorhabditis elegans From_analysis: Panther
      WBGene00164968 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00019989 Caenorhabditis elegans From_analysis: Panther
    Structured_description: Automated_description: Enriched in intestine and neurons based on RNA-seq and microarray studies. Is affected by several genes including unc-30; prg-1; and csr-1 based on tiling array; RNA-seq; and microarray studies. Is affected by seven chemicals including multi-walled carbon nanotube; Psoralens; and allantoin based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: M02F4.1
    Corresponding_CDS_history: M02F4.1:wp272
    Corresponding_transcript: M02F4.1.1
    Associated_feature: WBsf982139
      WBsf1004507
      WBsf1022560
  Experimental_info: RNAi_result: WBRNAi00017131 Inferred_automatically: RNAi_primary
      WBRNAi00098204 Inferred_automatically: RNAi_primary
      WBRNAi00050821 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1020280
      Expr1038533
      Expr1154516
    Drives_construct: WBCnstr00025637
    Construct_product: WBCnstr00025637
    Microarray_results (15)
    Expression_cluster: WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
      WBPaper00040560:hpl-2_embryo_downregulated
      WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00046805:csr-1(RNAi)_downregulated_Set1
      WBPaper00049377:MWCNT_downregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050743:elli-1(sam-3)_downregulated
      WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
      WBPaper00053402:cco-1(RNAi)_upregulated
      WBPaper00054191:H3.3(null)_L1_downregulated
      WBPaper00054493:hpl-2(tm1489)_downregulated
      WBPaper00055013:spt-16(RNAi)_upregulated
      WBPaper00055137:S.maltophilia_upregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
      WBPaper00056161:hermaphrodite_enriched_siRNA
      WBPaper00058948:PA14_upregulated
      WBPaper00058955:heatshock_upregulated_CE
      WBPaper00060014:set-2(zr2012)_upregulated
      WBPaper00060434:pH4.33_vs_pH6.33_uprgulated
      WBPaper00060764:swsn-1(os22ts)_downregulated
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061479:hrde-1(tm1200)_upregulated
      WBPaper00061479:mep-1(ne4629)_upregulated
      WBPaper00061479:prg-1(tm872)_upregulated
      WBPaper00061527:sre-33-ZK1025.1_8337
      WBPaper00061753:csr-1(tor159)_upregulated_25C
      WBPaper00062095:unc-4(e120)_upregulated_VA-neuron
      WBPaper00062103:neuron_enriched
      WBPaper00062156:jmjd-5(zr1234)_downregulated_germline
      WBPaper00062156:jmjd-5(zr1234)_upregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062456:doxycycline_downregulated_N2_transcript
      WBPaper00062585:hlh-26(ok1453)_downregulated_E.faecium
      WBPaper00064539:nhr-114(gk849)_upregulated
      WBPaper00064637:cox-5B(RNAi)_upregulated
      WBPaper00065841:22_0
      cgc4489_group_1
      WBPaper00024393:strongly_regulated_dauer_genes
      WBPaper00026980:intestine_enriched
      WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
      WBPaper00041939:control_vs_UVC-exposed_51h
      WBPaper00044091:Bpseudomallei_repressed_8h
      WBPaper00044091:Bpseudomallei_repressed_12h
      WBPaper00046548:dafachronic-acid_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
    Interaction: WBInteraction000151762
      WBInteraction000338946
      WBInteraction000399362
  Map_info: Positive: Positive_clone: M02F4 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: X -12.6516
  Method: Gene