WormBase Tree Display for Gene: WBGene00019427
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| WBGene00019427 | SMap | S_parent | Sequence | K06A1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | atg-16.2 | Person_evidence | WBPerson649 | |||||
| Sequence_name | K06A1.5 | ||||||||
| Molecular_name | K06A1.5 | ||||||||
| K06A1.5.1 | |||||||||
| CE39948 | |||||||||
| Other_name | CELE_K06A1.5 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | atg-16.2 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 29 Feb 2008 11:29:01 | WBPerson2970 | Name_change | CGC_name | atg-16.2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | atg | ||||||||
| Allele (30) | |||||||||
| Strain | WBStrain00033048 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (18) | |||||||||
| Contained_in_operon | CEOP2729 | ||||||||
| Ortholog (36) | |||||||||
| Paralog | WBGene00017178 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | atg-16.2 encodes a divergent ortholog of the autophagic budding yeast protein Atg16p, and of human ATG16L1 (OMIM:610767, associated with Crohndisease) and ATG16L2; ATG-16.2 is paralogous to ATG-16.1; ATG-16.2 hasno obvious function in mass RNAi assays. | Paper_evidence | WBPaper00031597 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 16 Mar 2008 00:00:00 | ||||||||
| Automated_description | Involved in defense response to Gram-positive bacterium; gamete generation; and macroautophagy. Located in cytoplasm. Expressed in body wall musculature; embryonic cell; intestine; neurons; and pharyngeal muscle cell. Human ortholog(s) of this gene implicated in inflammatory bowel disease 10. Is an ortholog of human ATG16L1 (autophagy related 16 like 1) and ATG16L2 (autophagy related 16 like 2). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0110885 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:21498) | ||||
| Molecular_info | Corresponding_CDS | K06A1.5 | |||||||
| Corresponding_CDS_history | K06A1.5:wp155 | ||||||||
| Corresponding_transcript | K06A1.5.1 | ||||||||
| Other_sequence | CJC03860_1 | ||||||||
| CR11609 | |||||||||
| CR01569 | |||||||||
| Oden_isotig18752 | |||||||||
| CRC02235_1 | |||||||||
| ES739747.1 | |||||||||
| CRC00622_1 | |||||||||
| HBC05383_1 | |||||||||
| CR05733 | |||||||||
| Associated_feature | WBsf650147 | ||||||||
| WBsf665614 | |||||||||
| WBsf223177 | |||||||||
| WBsf223178 | |||||||||
| WBsf223179 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00016651 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00092352 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00081157 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00102245 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00050018 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00092351 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00034001 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr11435 | ||||||||
| Expr1014835 | |||||||||
| Expr1038392 | |||||||||
| Expr1153711 | |||||||||
| Expr2009488 | |||||||||
| Expr2027725 | |||||||||
| Drives_construct | WBCnstr00025846 | ||||||||
| Construct_product | WBCnstr00019037 | ||||||||
| WBCnstr00025846 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (137) | |||||||||
| Interaction (34) | |||||||||
| Map_info | Map | II | Position | -0.237977 | Error | 0.00254 | |||
| Positive | Positive_clone | K06A1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (20) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
