WormBase Tree Display for Gene: WBGene00019227
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| WBGene00019227 | SMap | S_parent | Sequence | H22K11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | sgca-1 | Person_evidence | WBPerson1263 | |||||
| WBPerson2876 | |||||||||
| Sequence_name | H22K11.4 | ||||||||
| Molecular_name | H22K11.4a | ||||||||
| H22K11.4a.1 | |||||||||
| CE37119 | |||||||||
| H22K11.4b | |||||||||
| CE40082 | |||||||||
| H22K11.4b.1 | |||||||||
| Other_name | CELE_H22K11.4 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | sgca-1 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00019227 | |||||
| WormFlux | gene | WBGene00019227 | |||||||
| NDB | locus_tag | CELE_H22K11.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00019227|UniProtKB=H2L0C3 | |||||||
| family | PTHR10132 | ||||||||
| NCBI | gene | 180946 | |||||||
| RefSeq | protein | NM_001373339.3 | |||||||
| NM_001373338.3 | |||||||||
| TREEFAM | TREEFAM_ID | TF314655 | |||||||
| TrEMBL | UniProtAcc | Q1XFY3 | |||||||
| H2L0C3 | |||||||||
| UniProt_GCRP | UniProtAcc | H2L0C3 | |||||||
| OMIM | gene | 600119 | |||||||
| 604149 | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 29 Oct 2007 11:43:25 | WBPerson2970 | Name_change | CGC_name | sgca-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sgca | ||||||||
| Allele (40) | |||||||||
| Strain | WBStrain00032061 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00022985 | ||||||||
| 00022986 | |||||||||
| 00022987 | |||||||||
| 00124123 | |||||||||
| 00124124 | |||||||||
| 00124125 | |||||||||
| Ortholog (27) | |||||||||
| Structured_description | Concise_description | sgca-1 encodes a protein orthologous to the human gene SARCOGLYCAN, ALPHA (50KD DYSTROPHIN-ASSOCIATED GLYCOPROTEIN) (SGCA; OMIM:600119), which when mutated leads to disease. | Curator_confirmed | WBPerson1843 | |||||
| WBPerson1823 | |||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 19 Dec 2009 00:00:00 | ||||||||
| Automated_description | Predicted to enable calcium ion binding activity. Located in striated muscle dense body. Expressed in anal depressor muscle; anal sphincter muscle; body wall musculature; and vulval muscle. Human ortholog(s) of this gene implicated in autosomal recessive limb-girdle muscular dystrophy type 2D; myoclonic dystonia 11; and stomach cancer. Is an ortholog of human SGCA (sarcoglycan alpha) and SGCE (sarcoglycan epsilon). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0110278 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10805) | ||||
| DOID:9884 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10805) | ||||||
| DOID:10534 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10808) | ||||||
| DOID:0090034 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10808) | ||||||
| Molecular_info | Corresponding_CDS | H22K11.4a | |||||||
| H22K11.4b | |||||||||
| Corresponding_CDS_history | H22K11.4:wp121 | ||||||||
| H22K11.4:wp128 | |||||||||
| H22K11.4:wp156 | |||||||||
| H22K11.4a:wp271 | |||||||||
| H22K11.4b:wp271 | |||||||||
| Corresponding_transcript | H22K11.4a.1 | ||||||||
| H22K11.4b.1 | |||||||||
| Other_sequence | Oden_isotig26597 | ||||||||
| JI171235.1 | |||||||||
| DVC02223_1 | |||||||||
| CSC02338_1 | |||||||||
| Acan_isotig17435 | |||||||||
| Dviv_isotig28156 | |||||||||
| FD514430.1 | |||||||||
| EV852337.1 | |||||||||
| Associated_feature | WBsf654088 | ||||||||
| WBsf654089 | |||||||||
| WBsf670663 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00049458 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00016297 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr4924 | ||||||||
| Expr1015295 | |||||||||
| Expr1038304 | |||||||||
| Expr1153186 | |||||||||
| Expr2015800 | |||||||||
| Expr2034033 | |||||||||
| Drives_construct | WBCnstr00006007 | ||||||||
| WBCnstr00012337 | |||||||||
| WBCnstr00025982 | |||||||||
| Construct_product | WBCnstr00006007 | ||||||||
| WBCnstr00008298 | |||||||||
| WBCnstr00018329 | |||||||||
| WBCnstr00025982 | |||||||||
| Antibody | WBAntibody00002076 | ||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (123) | |||||||||
| Interaction | WBInteraction000460218 | ||||||||
| Map_info | Map | X | Position | -2.43167 | Error | 0.004636 | |||
| Positive | Positive_clone | H22K11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00005519 | ||||||||
| WBPaper00031003 | |||||||||
| WBPaper00035538 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00039233 | |||||||||
| WBPaper00041089 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
