WormBase Tree Display for Gene: WBGene00019030
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| WBGene00019030 | SMap | S_parent | Sequence | F58B6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 4 | |||||||
| Name | CGC_name | exc-6 | Person_evidence | WBPerson1052 | |||||
| WBPerson580 | |||||||||
| Sequence_name | F58B6.2 | ||||||||
| Molecular_name | F58B6.2 | ||||||||
| F58B6.2.1 | |||||||||
| CE46968 | |||||||||
| Other_name | inft-1 | Person_evidence | WBPerson314 | ||||||
| WBPerson3809 | |||||||||
| tag-268 | |||||||||
| CELE_F58B6.2 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | exc-6 | ||||||||
| DB_info | Database | AceView | gene | 3C201 | |||||
| WormQTL | gene | WBGene00019030 | |||||||
| WormFlux | gene | WBGene00019030 | |||||||
| NDB | locus_tag | CELE_F58B6.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00019030|UniProtKB=Q9TYU9 | |||||||
| family | PTHR45691 | ||||||||
| NCBI | gene | 175277 | |||||||
| RefSeq | protein | NM_064933.5 | |||||||
| SwissProt | UniProtAcc | Q9TYU9 | |||||||
| TREEFAM | TREEFAM_ID | TF338399 | |||||||
| UniProt_GCRP | UniProtAcc | Q9TYU9 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 21 Jun 2005 09:45:25 | WBPerson2970 | Name_change | CGC_name | tag-268 | ||||
| 3 | 29 Jun 2006 14:05:41 | WBPerson2970 | Name_change | CGC_name | inft-1 | ||||
| Other_name | tag-268 | ||||||||
| 4 | 04 Jul 2013 12:08:29 | WBPerson2970 | Event | Acquires_merge | WBGene00001367 | ||||
| Name_change | CGC_name | exc-6 | |||||||
| Other_name | inft-1 | ||||||||
| Acquires_merge | WBGene00001367 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | exc | ||||||||
| Allele (336) | |||||||||
| Legacy_information | [Buechner M] exc for excretory canal defect. Canal varies in length from no outgrowth to almost complete outgrowth. Frequent small vacuoles and extra branchings in the canal lumen visible only by Nomarski microscopy. Animal is somewhat pale. | ||||||||
| [C.elegansII] rh103 : excretory canal defect. Canal varies in length from no outgrowth to almost complete outgrowth. Frequent small vacuoles and extrabranchings in the canal lumen visible only by Nomarski microscopy. Animal is somewhat pale. NA1,[NJ] | |||||||||
| Strain | WBStrain00028858 | ||||||||
| WBStrain00036165 | |||||||||
| WBStrain00008066 | |||||||||
| WBStrain00008065 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Ortholog (38) | |||||||||
| Paralog | WBGene00000872 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00008848 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00016735 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00018976 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00021473 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00021698 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable actin binding activity. Involved in epithelium development; regulation of microtubule polymerization; and regulation of tube size. Part of filamentous actin. Is an ortholog of human FHDC1 (FH2 domain containing 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F58B6.2 | |||||||
| Corresponding_CDS_history | F58B6.2:wp229 | ||||||||
| Corresponding_transcript | F58B6.2.1 | ||||||||
| Other_sequence (55) | |||||||||
| Associated_feature | WBsf658597 | ||||||||
| WBsf717858 | |||||||||
| WBsf991227 | |||||||||
| WBsf991228 | |||||||||
| WBsf991229 | |||||||||
| WBsf991230 | |||||||||
| WBsf1014181 | |||||||||
| Experimental_info | RNAi_result (14) | ||||||||
| Expr_pattern | Expr3604 | ||||||||
| Expr6251 | |||||||||
| Expr12322 | |||||||||
| Expr13058 | |||||||||
| Expr14689 | |||||||||
| Expr1013993 | |||||||||
| Expr1038217 | |||||||||
| Expr1152701 | |||||||||
| Expr2011392 | |||||||||
| Expr2029628 | |||||||||
| Drives_construct | WBCnstr00004187 | ||||||||
| WBCnstr00021177 | |||||||||
| WBCnstr00038209 | |||||||||
| Construct_product | WBCnstr00011529 | ||||||||
| WBCnstr00020996 | |||||||||
| WBCnstr00038209 | |||||||||
| WBCnstr00041220 | |||||||||
| Antibody | WBAntibody00002375 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (144) | |||||||||
| Interaction (17) | |||||||||
| Map_info | Map | III | Position | -22.7363 | Error | 0.234072 | |||
| Positive | Positive_clone | F58B6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5299 | |||||||
| 2076 | |||||||||
| 3280 | |||||||||
| 3291 | |||||||||
| Pos_neg_data | 8596 | ||||||||
| Pseudo_map_position | |||||||||
| Reference (19) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
