WormBase Tree Display for Gene: WBGene00018822
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| WBGene00018822 | SMap | S_parent | Sequence | F54D12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | F54D12.9 | |||||||
| Molecular_name | F54D12.9 | ||||||||
| F54D12.9.1 | |||||||||
| CE36307 | |||||||||
| Other_name | CELE_F54D12.9 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | F54D12.9 | ||||||||
| DB_info | Database | AceView | gene | 2B670 | |||||
| WormQTL | gene | WBGene00018822 | |||||||
| WormFlux | gene | WBGene00018822 | |||||||
| NDB | locus_tag | CELE_F54D12.9 | |||||||
| NCBI | gene | 3565970 | |||||||
| RefSeq | protein | NM_001027025.5 | |||||||
| TREEFAM | TREEFAM_ID | TF342747 | |||||||
| TrEMBL | UniProtAcc | Q71V01 | |||||||
| UniProt_GCRP | UniProtAcc | Q71V01 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (16) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Contained_in_operon | CEOP2676 | ||||||||
| Ortholog (28) | |||||||||
| Paralog | WBGene00008826 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WBGene00009360 | |||||||||
| WBGene00011921 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00015854 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00016770 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00044538 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00044162 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00077624 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00018816 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Enriched in excretory cell; interfacial epithelial cell; and in male based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including rrf-3; eat-2; and tph-1 based on tiling array; RNA-seq; and microarray studies. Is affected by seven chemicals including Alovudine; stavudine; and Psoralens based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Domain of unknown function (DUF281) and Domain of unknown function DUF281. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F54D12.9 | |||||||
| Corresponding_transcript | F54D12.9.1 | ||||||||
| Associated_feature | WBsf649860 | ||||||||
| WBsf665355 | |||||||||
| WBsf986672 | |||||||||
| WBsf222686 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00015613 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00048305 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00002254 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1012372 | ||||||||
| Expr1152107 | |||||||||
| Expr2004146 | |||||||||
| Expr2022370 | |||||||||
| Microarray_results (14) | |||||||||
| Expression_cluster (63) | |||||||||
| Map_info | Positive | Positive_clone | F54D12 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | II | -15.4684 | |||||||
| Method | Gene |
