WormBase Tree Display for Gene: WBGene00018755
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| WBGene00018755 | SMap | S_parent | Sequence | F53C3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | bcmo-2 | Person_evidence | WBPerson184 | |||||
| Sequence_name | F53C3.12 | ||||||||
| Molecular_name | F53C3.12 | ||||||||
| F53C3.12.1 | |||||||||
| CE32672 | |||||||||
| Other_name | CELE_F53C3.12 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | bcmo-2 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 10 Mar 2008 13:28:35 | WBPerson2970 | Name_change | CGC_name | bcmo-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | bcmo | ||||||||
| Allele (50) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00097259 | ||||||||
| 00097260 | |||||||||
| 00097261 | |||||||||
| 00097262 | |||||||||
| 00097263 | |||||||||
| 00123785 | |||||||||
| Ortholog (47) | |||||||||
| Paralog | WBGene00012914 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00018640 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable beta-carotene 15,15'-dioxygenase activity and carotenoid dioxygenase activity. Predicted to be involved in carotene catabolic process and retinal metabolic process. Human ortholog(s) of this gene implicated in carcinoma (multiple) and retinal disease (multiple). Is an ortholog of human BCO1 (beta-carotene oxygenase 1); BCO2 (beta-carotene oxygenase 2); and RPE65 (retinoid isomerohydrolase RPE65). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0112144 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10294) | ||||
| DOID:0110016 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10294) | ||||||
| DOID:2513 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10294) | ||||||
| DOID:10584 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10294) | ||||||
| DOID:0110353 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10294) | ||||||
| DOID:1749 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10294) | ||||||
| Molecular_info | Corresponding_CDS | F53C3.12 | |||||||
| Corresponding_CDS_history | F53C3.12:wp90 | ||||||||
| Corresponding_transcript | F53C3.12.1 | ||||||||
| Other_sequence | EY466998.1 | ||||||||
| FC554225.1 | |||||||||
| EY461742.1 | |||||||||
| Dviv_isotig23367 | |||||||||
| CBC16783_1 | |||||||||
| EY468207.1 | |||||||||
| Acan_isotig07756 | |||||||||
| ACC04608_1 | |||||||||
| EY463040.1 | |||||||||
| FC544980.1 | |||||||||
| Associated_feature | WBsf987408 | ||||||||
| WBsf222888 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00070156 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00015497 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00103378 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00033618 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00048109 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1025950 | ||||||||
| Expr1151920 | |||||||||
| Expr2009586 | |||||||||
| Expr2027823 | |||||||||
| Drives_construct | WBCnstr00026292 | ||||||||
| Construct_product | WBCnstr00026292 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (201) | |||||||||
| Interaction (13) | |||||||||
| Map_info | Map | II | Position | -5.97322 | Error | 0.012158 | |||
| Positive | Positive_clone | F53C3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00026283 | ||||||||
| WBPaper00028791 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00045886 | |||||||||
| WBPaper00048371 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00062524 | |||||||||
| WBPaper00064370 | |||||||||
| WBPaper00064898 | |||||||||
| WBPaper00065331 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
