WormBase Tree Display for Gene: WBGene00018755

WBGene00018755 SMap: S_parent: Sequence: F53C3
  Identity: Version: 2
    Name: CGC_name: bcmo-2 Person_evidence: WBPerson184
      Sequence_name: F53C3.12
      Molecular_name: F53C3.12
        F53C3.12.1
        CE32672
      Other_name: CELE_F53C3.12 Accession_evidence: NDB BX284602
      Public_name: bcmo-2
    DB_info: Database (11)
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:00 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 10 Mar 2008 13:28:35 WBPerson2970 Name_change: CGC_name: bcmo-2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: bcmo
    Allele (50)
    RNASeq_FPKM (74)
    GO_annotation: 00097259
      00097260
      00097261
      00097262
      00097263
      00123785
    Ortholog: WBGene00064993 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00037848 Caenorhabditis briggsae From_analysis: OrthoMCL
      WBGene00037863 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            WormBase-Compara
      WBGene00141984 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00111945 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      CBOVI.g6860 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP26.g642 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g275 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g12628 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g20408 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g12390 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP32.g12398 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP32.g12399 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g12539 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g19500 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g3596 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g14816 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_01075.g15594 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_II.g4296 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g13206 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_07284.g37581 Caenorhabditis sinica From_analysis: WormBase-Compara
      Csp5_scaffold_07872.g38226 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_09552 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_004006 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g08809 Oscheius tipulae From_analysis: WormBase-Compara
      Sp34_20236820 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g4152 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00264815 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00294805 Trichuris muris From_analysis: WormBase-Compara
      FB:FBgn0002937 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-010508-1 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-010509-1 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-040426-1191 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoInspector
            Panther
            SonicParanoid
      ZFIN:ZDB-GENE-040426-1717 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-060421-7448 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-030131-8039 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-050410-16 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-081104-505 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
            OrthoInspector
            Panther
            SonicParanoid
      HGNC:10294 Homo sapiens From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:13815 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoInspector
            Panther
            SonicParanoid
      HGNC:18503 Homo sapiens From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:98001 Mus musculus From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1926923 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoInspector
            Panther
            SonicParanoid
      MGI:2177469 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:621396 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Inparanoid
            OMA
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:70981 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoInspector
            Panther
            SonicParanoid
      RGD:1309022 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoInspector
            Panther
            SonicParanoid
    Paralog: WBGene00012914 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00018640 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable beta-carotene 15,15'-dioxygenase activity and carotenoid dioxygenase activity. Predicted to be involved in carotene catabolic process and retinal metabolic process. Human ortholog(s) of this gene implicated in carcinoma (multiple) and retinal disease (multiple). Is an ortholog of human BCO1 (beta-carotene oxygenase 1); BCO2 (beta-carotene oxygenase 2); and RPE65 (retinoid isomerohydrolase RPE65). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0112144 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:10294)
      DOID:0110016 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:10294)
      DOID:2513 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:10294)
      DOID:10584 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:10294)
      DOID:0110353 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:10294)
      DOID:1749 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:10294)
  Molecular_info: Corresponding_CDS: F53C3.12
    Corresponding_CDS_history: F53C3.12:wp90
    Corresponding_transcript: F53C3.12.1
    Other_sequence: EY466998.1
      FC554225.1
      EY461742.1
      Dviv_isotig23367
      CBC16783_1
      EY468207.1
      Acan_isotig07756
      ACC04608_1
      EY463040.1
      FC544980.1
    Associated_feature: WBsf987408
      WBsf222888
  Experimental_info: RNAi_result: WBRNAi00070156 Inferred_automatically: RNAi_primary
      WBRNAi00015497 Inferred_automatically: RNAi_primary
      WBRNAi00103378 Inferred_automatically: RNAi_primary
      WBRNAi00033618 Inferred_automatically: RNAi_primary
      WBRNAi00048109 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1025950
      Expr1151920
      Expr2009586
      Expr2027823
    Drives_construct: WBCnstr00026292
    Construct_product: WBCnstr00026292
    Microarray_results (19)
    Expression_cluster (201)
    Interaction (13)
  Map_info: Map: II Position: -5.97322 Error: 0.012158
    Positive: Positive_clone: F53C3 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00026283
    WBPaper00028791
    WBPaper00038491
    WBPaper00045886
    WBPaper00048371
    WBPaper00055090
    WBPaper00062524
    WBPaper00064370
    WBPaper00064898
    WBPaper00065331
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene