WormBase Tree Display for Gene: WBGene00018625
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| WBGene00018625 | SMap | S_parent | Sequence | F49D11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | prp-17 | Person_evidence | WBPerson555 | |||||
| Sequence_name | F49D11.1 | ||||||||
| Molecular_name | F49D11.1 | ||||||||
| F49D11.1.1 | |||||||||
| CE28405 | |||||||||
| Other_name | CELE_F49D11.1 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | prp-17 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 01 Apr 2005 11:05:24 | WBPerson2970 | Name_change | CGC_name | prp-17 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | prp | ||||||||
| Allele (53) | |||||||||
| Strain | WBStrain00003948 | ||||||||
| WBStrain00003949 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00033212 | ||||||||
| 00033213 | |||||||||
| 00033214 | |||||||||
| 00123711 | |||||||||
| 00123712 | |||||||||
| Contained_in_operon | CEOP1650 | ||||||||
| Ortholog (40) | |||||||||
| Paralog | WBGene00021877 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | prp-17 encodes an ortholog of vertebrate pre-mRNA splicing factor 17 (PRP17) and Saccharomyces CDC40p that function in pre-mRNA splicing; PRP-17 activity is required for distal tip cell migation, germline sex determination, and the mitosis vs. meiosis decision in the developing germline. | Paper_evidence | WBPaper00036244 | |||||
| WBPaper00045396 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 23 Jun 2014 00:00:00 | ||||||||
| Automated_description | Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of catalytic step 2 spliceosome. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 15. Is an ortholog of human CDC40 (cell division cycle 40). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0112326 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:17350) | ||||
| Molecular_info | Corresponding_CDS | F49D11.1 | |||||||
| Corresponding_transcript | F49D11.1.1 | ||||||||
| Other_sequence (51) | |||||||||
| Associated_feature | WBsf656930 | ||||||||
| WBsf656931 | |||||||||
| WBsf656932 | |||||||||
| WBsf218504 | |||||||||
| WBsf218505 | |||||||||
| WBsf218506 | |||||||||
| Experimental_info | RNAi_result (19) | ||||||||
| Expr_pattern | Expr1026972 | ||||||||
| Expr1038016 | |||||||||
| Expr1151656 | |||||||||
| Expr2015108 | |||||||||
| Expr2033346 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (121) | |||||||||
| Interaction (161) | |||||||||
| Map_info | Map | I | Position | 6.15097 | Error | 0.078954 | |||
| Positive | Positive_clone | F49D11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00025739 | ||||||||
| WBPaper00036244 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00045396 | |||||||||
| WBPaper00048493 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
