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WormBase Tree Display for Gene: WBGene00018510

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Name Class

WBGene00018510SMapS_parentSequenceF46F11
IdentityVersion1
NameSequence_nameF46F11.7
Molecular_nameF46F11.7
F46F11.7.1
CE39101
Other_nameCELE_F46F11.7Accession_evidenceNDBBX284601
Public_nameF46F11.7
DB_infoDatabaseAceViewgene1G191
WormQTLgeneWBGene00018510
WormFluxgeneWBGene00018510
NDBlocus_tagCELE_F46F11.7
PanthergeneCAEEL|WormBase=WBGene00018510|UniProtKB=P91307
familyPTHR36519
NCBIgene185873
RefSeqproteinNM_059245.8
TREEFAMTREEFAM_IDTF320452
TrEMBLUniProtAccP91307
UniProt_GCRPUniProtAccP91307
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:00WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (32)
RNASeq_FPKM (74)
Contained_in_operonCEOP1268
Ortholog (24)
Paralog (16)
Structured_descriptionConcise_descriptionF46F11.7 encodes a protein, conserved amongst nematodes, that displays some similarity to mammalian extracellular matrix molecules such as mouse tenascin and human keratin-associated protein 4-7; about 1% to 10% of F46F11.7 transcripts are RNA edited to change A to G resulting in a change to residue 61 from glutamate (E) to glycine (G); large-scale physical interaction studies showed that the product of F46F11.7 can interact with UNC-97, a LIM domain-containing protein involved in assembly of integrin cell adhesion complexes in body wall muscle.Paper_evidenceWBPaper00045975
WBPaper00006332
Curator_confirmedWBPerson1843
WBPerson4025
Date_last_updated19 Nov 2014 00:00:00
Automated_descriptionEnriched in several structures, including ABarpaapap; ABarpaappa; ABarpaappp; ABarppaapa; and germ line based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-12; rrf-3; and pmk-1 based on microarray; tiling array; and RNA-seq studies. Is affected by eleven chemicals including rotenone; Alovudine; and stavudine based on RNA-seq and microarray studies.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF46F11.7
Corresponding_CDS_historyF46F11.7:wp112
F46F11.7:wp148
Corresponding_transcriptF46F11.7.1
Other_sequence (15)
Associated_featureWBsf643301
WBsf217685
WBsf217686
Experimental_infoRNAi_resultWBRNAi00032368Inferred_automaticallyRNAi_primary
WBRNAi00003687Inferred_automaticallyRNAi_primary
WBRNAi00047536Inferred_automaticallyRNAi_primary
WBRNAi00061814Inferred_automaticallyRNAi_primary
Expr_patternExpr1028855
Expr1037974
Expr1151376
Expr2003800
Expr2022020
Drives_constructWBCnstr00026460
Construct_productWBCnstr00026460
Microarray_results (19)
Expression_cluster (144)
Interaction (14)
Map_infoPositivePositive_cloneF46F11Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionI0.277673
MethodGene