WormBase Tree Display for Gene: WBGene00018510
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WBGene00018510 | SMap | S_parent | Sequence | F46F11 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | Sequence_name | F46F11.7 | |||||||
Molecular_name | F46F11.7 | ||||||||
F46F11.7.1 | |||||||||
CE39101 | |||||||||
Other_name | CELE_F46F11.7 | Accession_evidence | NDB | BX284601 | |||||
Public_name | F46F11.7 | ||||||||
DB_info | Database | AceView | gene | 1G191 | |||||
WormQTL | gene | WBGene00018510 | |||||||
WormFlux | gene | WBGene00018510 | |||||||
NDB | locus_tag | CELE_F46F11.7 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00018510|UniProtKB=P91307 | |||||||
family | PTHR36519 | ||||||||
NCBI | gene | 185873 | |||||||
RefSeq | protein | NM_059245.8 | |||||||
TREEFAM | TREEFAM_ID | TF320452 | |||||||
TrEMBL | UniProtAcc | P91307 | |||||||
UniProt_GCRP | UniProtAcc | P91307 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Allele (32) | |||||||||
RNASeq_FPKM (74) | |||||||||
Contained_in_operon | CEOP1268 | ||||||||
Ortholog (24) | |||||||||
Paralog (16) | |||||||||
Structured_description | Concise_description | F46F11.7 encodes a protein, conserved amongst nematodes, that displays some similarity to mammalian extracellular matrix molecules such as mouse tenascin and human keratin-associated protein 4-7; about 1% to 10% of F46F11.7 transcripts are RNA edited to change A to G resulting in a change to residue 61 from glutamate (E) to glycine (G); large-scale physical interaction studies showed that the product of F46F11.7 can interact with UNC-97, a LIM domain-containing protein involved in assembly of integrin cell adhesion complexes in body wall muscle. | Paper_evidence | WBPaper00045975 | |||||
WBPaper00006332 | |||||||||
Curator_confirmed | WBPerson1843 | ||||||||
WBPerson4025 | |||||||||
Date_last_updated | 19 Nov 2014 00:00:00 | ||||||||
Automated_description | Enriched in several structures, including ABarpaapap; ABarpaappa; ABarpaappp; ABarppaapa; and germ line based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-12; rrf-3; and pmk-1 based on microarray; tiling array; and RNA-seq studies. Is affected by eleven chemicals including rotenone; Alovudine; and stavudine based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F46F11.7 | |||||||
Corresponding_CDS_history | F46F11.7:wp112 | ||||||||
F46F11.7:wp148 | |||||||||
Corresponding_transcript | F46F11.7.1 | ||||||||
Other_sequence (15) | |||||||||
Associated_feature | WBsf643301 | ||||||||
WBsf217685 | |||||||||
WBsf217686 | |||||||||
Experimental_info | RNAi_result | WBRNAi00032368 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00003687 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00047536 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00061814 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1028855 | ||||||||
Expr1037974 | |||||||||
Expr1151376 | |||||||||
Expr2003800 | |||||||||
Expr2022020 | |||||||||
Drives_construct | WBCnstr00026460 | ||||||||
Construct_product | WBCnstr00026460 | ||||||||
Microarray_results (19) | |||||||||
Expression_cluster (144) | |||||||||
Interaction (14) | |||||||||
Map_info | Positive | Positive_clone | F46F11 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
Interpolated_map_position | I | 0.277673 | |||||||
Method | Gene |