WormBase Tree Display for Gene: WBGene00018215
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| WBGene00018215 | SMap | S_parent | Sequence | F39H12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | igcm-1 | Person_evidence | WBPerson1103 | |||||
| Sequence_name | F39H12.4 | ||||||||
| Molecular_name | F39H12.4 | ||||||||
| F39H12.4.1 | |||||||||
| CE24963 | |||||||||
| Other_name | CELE_F39H12.4 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | igcm-1 | ||||||||
| DB_info | Database | AceView | gene | XB466 | |||||
| WormQTL | gene | WBGene00018215 | |||||||
| WormFlux | gene | WBGene00018215 | |||||||
| NDB | locus_tag | CELE_F39H12.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00018215|UniProtKB=Q9TXI8 | |||||||
| family | PTHR11640 | ||||||||
| NCBI | gene | 180433 | |||||||
| RefSeq | protein | NM_075765.8 | |||||||
| TREEFAM | TREEFAM_ID | TF327139 | |||||||
| TrEMBL | UniProtAcc | Q9TXI8 | |||||||
| UniProt_GCRP | UniProtAcc | Q9TXI8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:00 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 25 Jan 2005 16:28:46 | WBPerson2970 | Name_change | CGC_name | igcm-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | igcm | ||||||||
| Allele (72) | |||||||||
| Strain | WBStrain00001850 | ||||||||
| WBStrain00031583 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00097045 | ||||||||
| 00097046 | |||||||||
| 00097047 | |||||||||
| 00097048 | |||||||||
| 00097049 | |||||||||
| Ortholog (34) | |||||||||
| Paralog | WBGene00004729 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00006365 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00007750 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00020130 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Concise_description | igcm-1 encodes a protein containing immunoglobulin and fibronectin repeats; igcm-1 promoter::gfp fusions are expressed in the labial neurons, including the sheath and socket cells, as well as in the pharynx and lateral hypodermis. | Curator_confirmed | WBPerson1843 | |||||
| Date_last_updated | 25 Mar 2008 00:00:00 | ||||||||
| Automated_description | Predicted to enable cell adhesion molecule binding activity. Predicted to be involved in cell-cell adhesion. Predicted to be located in cell-cell junction. Expressed in several structures, including interfacial epithelial cell; intestine; labial sensillum; neurons; and pharynx. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F39H12.4 | |||||||
| Corresponding_transcript | F39H12.4.1 | ||||||||
| Other_sequence | Acan_isotig21256 | ||||||||
| CR11677 | |||||||||
| CR11676 | |||||||||
| CR05184 | |||||||||
| CRC01202 | |||||||||
| Associated_feature (15) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00046801 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00031998 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1752 | ||||||||
| Expr1765 | |||||||||
| Expr6004 | |||||||||
| Expr8851 | |||||||||
| Expr13053 | |||||||||
| Expr1011700 | |||||||||
| Expr1037843 | |||||||||
| Expr1150676 | |||||||||
| Expr2012703 | |||||||||
| Expr2030939 | |||||||||
| Drives_construct | WBCnstr00001449 | ||||||||
| WBCnstr00001450 | |||||||||
| WBCnstr00001451 | |||||||||
| WBCnstr00002642 | |||||||||
| WBCnstr00013561 | |||||||||
| WBCnstr00026693 | |||||||||
| WBCnstr00038452 | |||||||||
| Construct_product | WBCnstr00026693 | ||||||||
| WBCnstr00038452 | |||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (239) | |||||||||
| Interaction (11) | |||||||||
| Map_info | Map | X | Position | -19.4791 | Error | 0.005133 | |||
| Positive | Positive_clone | F39H12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5067 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00036330 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065331 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
