WormBase Tree Display for Gene: WBGene00018167
expand all nodes | collapse all nodes | view schema
| WBGene00018167 | SMap | S_parent | Sequence | F38A5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | nspb-4 | Person_evidence | WBPerson655 | |||||
| Sequence_name | F38A5.10 | ||||||||
| Molecular_name | F38A5.10 | ||||||||
| F38A5.10.1 | |||||||||
| CE10044 | |||||||||
| Other_name | CELE_F38A5.10 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | nspb-4 | ||||||||
| DB_info | Database | AceView | gene | 4H361 | |||||
| WormQTL | gene | WBGene00018167 | |||||||
| WormFlux | gene | WBGene00018167 | |||||||
| NDB | locus_tag | CELE_F38A5.10 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00018167|UniProtKB=Q94210 | |||||||
| family | PTHR31887 | ||||||||
| NCBI | gene | 185446 | |||||||
| RefSeq | protein | NM_068611.3 | |||||||
| TREEFAM | TREEFAM_ID | TF319426 | |||||||
| TrEMBL | UniProtAcc | Q94210 | |||||||
| UniProt_GCRP | UniProtAcc | Q94210 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 06 May 2005 10:44:15 | WBPerson2970 | Name_change | CGC_name | nspb-4 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nspb | ||||||||
| Allele | WBVar02156500 | ||||||||
| WBVar01499395 | |||||||||
| WBVar01499396 | |||||||||
| WBVar02120505 | |||||||||
| WBVar01499633 | |||||||||
| WBVar00916944 | |||||||||
| WBVar01500245 | |||||||||
| Strain | WBStrain00051272 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (15) | |||||||||
| Paralog | WBGene00018162 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WBGene00018166 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WBGene00018169 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WBGene00019152 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WBGene00018170 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| Structured_description | Automated_description | Enriched in germ line and pharynx based on RNA-seq studies. Is affected by several genes including daf-2; rrf-3; and eat-2 based on microarray; quantitative PCR; and RNA-seq studies. Is affected by ten chemicals including hydrogen sulfide; D-glucose; and Cry5B based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Protein of unknown function (DUF1459) and Protein of unknown function DUF1459. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F38A5.10 | |||||||
| Corresponding_transcript | F38A5.10.1 | ||||||||
| Associated_feature | WBsf228432 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00008764 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00025434 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00069426 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00085531 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00014533 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00046668 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00014526 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00031940 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00014524 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00046674 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1027761 | ||||||||
| Expr1150542 | |||||||||
| Expr2014458 | |||||||||
| Expr2032698 | |||||||||
| Drives_construct | WBCnstr00026730 | ||||||||
| Construct_product | WBCnstr00026730 | ||||||||
| Microarray_results | SMD_F38A5.10 | ||||||||
| A_12_P107539 | |||||||||
| Aff_F38A5.10 | |||||||||
| GPL8304_CE_WBGene00018167_A | |||||||||
| GPL8673_F38A5_10P00113 | |||||||||
| GPL8673_F38A5_10P00123 | |||||||||
| GPL9450_F38A5.10 | |||||||||
| cea2.d.24330 | |||||||||
| Expression_cluster (90) | |||||||||
| Interaction | WBInteraction000122426 | ||||||||
| WBInteraction000279394 | |||||||||
| WBInteraction000331204 | |||||||||
| WBInteraction000399913 | |||||||||
| Map_info | Map | IV | Position | 3.21279 | |||||
| Positive | Positive_clone | F38A5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
