WormBase Tree Display for Gene: WBGene00018162

WBGene00018162 SMap: S_parent: Sequence: F38A5
  Identity: Version: 2
    Name: CGC_name: nspb-3 Person_evidence: WBPerson655
      Sequence_name: F38A5.5
      Molecular_name: F38A5.5
        F38A5.5.1
        CE10034
      Other_name: CELE_F38A5.5 Accession_evidence: NDB BX284604
      Public_name: nspb-3
    DB_info: Database: AceView gene 4H358
        WormQTL gene WBGene00018162
        WormFlux gene WBGene00018162
        NDB locus_tag CELE_F38A5.5
        Panther gene CAEEL|WormBase=WBGene00018162|UniProtKB=Q94212
          family PTHR31887
        NCBI gene 185443
        RefSeq protein NM_068609.3
        TREEFAM TREEFAM_ID TF319426
        TrEMBL UniProtAcc Q94212
        UniProt_GCRP UniProtAcc Q94212
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:59 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 06 May 2005 10:44:15 WBPerson2970 Name_change: CGC_name: nspb-3
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nspb
    Allele: WBVar01499395
      WBVar01499396
      WBVar00427254
      WBVar02120505
      WBVar01499633
      WBVar00916924
      WBVar01500245
    RNASeq_FPKM (74)
    Ortholog (14)
    Paralog: WBGene00018170 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00018169 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00018167 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
      WBGene00018166 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00019152 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
    Structured_description: Automated_description: Enriched in GABAergic neurons based on RNA-seq studies. Is affected by several genes including daf-2; rrf-3; and eat-2 based on quantitative PCR; microarray; and RNA-seq studies. Is affected by eighteen chemicals including aldicarb; D-glucose; and Cry5B based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Protein of unknown function (DUF1459) and Protein of unknown function DUF1459. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F38A5.5
    Corresponding_transcript: F38A5.5.1
    Other_sequence: CSC00831_1
      CBC15537_1
      FD517213.1
    Associated_feature: WBsf230178
  Experimental_info: RNAi_result: WBRNAi00008764 Inferred_automatically: RNAi_primary
      WBRNAi00025434 Inferred_automatically: RNAi_primary
      WBRNAi00069426 Inferred_automatically: RNAi_primary
      WBRNAi00085531 Inferred_automatically: RNAi_primary
      WBRNAi00014533 Inferred_automatically: RNAi_primary
      WBRNAi00014526 Inferred_automatically: RNAi_primary
      WBRNAi00014524 Inferred_automatically: RNAi_primary
      WBRNAi00046674 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1150549
      Expr2014457
    Drives_construct: WBCnstr00026735
    Construct_product: WBCnstr00026735
    Microarray_results: SMD_F38A5.5
      172417_x_at
      172595_x_at
      185454_s_at
      A_12_P110586
      GPL19516_CGZ0020360
      GPL21109_F38A5.5
      GPL3518_CE10034
      GPL8304_CE_WBGene00018162_A
      GPL8673_F38A5_5P00158
    Expression_cluster (113)
    Interaction (25)
  Map_info: Map: IV Position: 3.21259
    Positive: Positive_clone: F38A5 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene