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WormBase Tree Display for Gene: WBGene00017830

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Name Class

WBGene00017830SMapS_parentSequenceF26F4
IdentityVersion2
NameCGC_namerpb-8Person_evidenceWBPerson1787
Sequence_nameF26F4.11
Molecular_nameF26F4.11
F26F4.11.1
CE04448
Other_nameCELE_F26F4.11Accession_evidenceNDBBX284603
Public_namerpb-8
DB_infoDatabaseAceViewgene3G6
WormQTLgeneWBGene00017830
WormFluxgeneWBGene00017830
NDBlocus_tagCELE_F26F4.11
PanthergeneCAEEL|WormBase=WBGene00017830|UniProtKB=Q19826
familyPTHR10917
NCBIgene175660
RefSeqproteinNM_065635.5
SwissProtUniProtAccQ19826
TREEFAMTREEFAM_IDTF103043
UniProt_GCRPUniProtAccQ19826
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:59WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
204 Oct 2007 14:17:58WBPerson2970Name_changeCGC_namerpb-8
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classrpb
AlleleWBVar02156492
WBVar01494586
WBVar00396910
WBVar00396911
WBVar00824640
WBVar00824641
StrainWBStrain00051264
RNASeq_FPKM (74)
GO_annotation (18)
Contained_in_operonCEOP3895
Ortholog (33)
Structured_descriptionAutomated_descriptionPredicted to enable DNA binding activity and DNA-directed 5'-3' RNA polymerase activity. Predicted to contribute to RNA polymerase I activity; RNA polymerase II activity; and RNA polymerase III activity. Predicted to be involved in transcription by RNA polymerase I; transcription by RNA polymerase II; and transcription by RNA polymerase III. Predicted to be located in nucleus. Predicted to be part of RNA polymerase I complex; RNA polymerase II, core complex; and RNA polymerase III complex. Is an ortholog of human POLR2H (RNA polymerase II, I and III subunit H).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF26F4.11
Corresponding_transcriptF26F4.11.1
Other_sequence (55)
Associated_featureWBsf651017
WBsf226606
Experimental_infoRNAi_result (30)
Expr_patternExpr1014365
Expr1037663
Expr1149583
Expr2015428
Expr2033663
Drives_constructWBCnstr00026981
Construct_productWBCnstr00026981
Microarray_results (18)
Expression_clusterWBPaper00031040:TGF-beta_adult_downregulated
WBPaper00032097:CGH-1-associated-mRNA
WBPaper00032528:L3_enriched
WBPaper00033065:cyc-1(RNAi)_downregulated
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00041072:UTX-1_interacting_protein
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044501:gld-1_let-7_regulated
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00045420:fertilization_downregulated_protein
WBPaper00045521:Gender_Neutral
WBPaper00045571:germline-ablation_downregulated
WBPaper00045774:clk-1_downregulated
WBPaper00045861:wdr-5(ok1417)_downregulated
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
WBPaper00048988:neuron_expressed
WBPaper00049018:swsn-2.2(RNAi)_upregulated
WBPaper00049217:DAF-16_downregulated
WBPaper00049498:npr-1(ur89)_regulated_6
WBPaper00049545:cco-1(RNAi)_downregulated
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
WBPaper00049942:HeatShock_downregulated_hsf-1(RNAi)
WBPaper00049942:hsf-1(RNAi)_downregulated
WBPaper00050225:flp-6(RNAi)_downregulated
WBPaper00050344:AFD-neuron_enriched
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050686:glp-1(e2141)_downregulated
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:body-muscle_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00050990:pharynx_expressed
WBPaper00050990:seam_expressed
WBPaper00051039:germline_enriched
WBPaper00051245:epidermis_cytoplasm_expressed
WBPaper00051245:epidermis_nucleus_expressed
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00051245:intestine_nucleus_expressed
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053289:DREAM-target
WBPaper00053388:dauer_regulated_Cluster6
WBPaper00053810:daf-2(e1370)_downregulated
WBPaper00053810:nuo-6(qm200)_downregulated
WBPaper00055049:S.gordonii_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055482:pmt-2(RNAi)_downregulated
WBPaper00055648:germline_expressed
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_downregulated_N2
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056471:S.aureus-4h_downregulated_N2
WBPaper00056826:SGP_biased
WBPaper00057041:unc-70(cas983)_upregulated
WBPaper00058598:sin-3(tm1276)_upregulated
WBPaper00060014:set-2(tm1630)_upregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060661:sensory-neuron_depleted
WBPaper00060683:hlh-11(ko1)_downregulated
WBPaper00061203:sin-3(tm1276)_downregulated
WBPaper00061203:spr-1(ok2144)_downregulated
WBPaper00061341:28C_24h_downregulated
WBPaper00061341:28C_48h_downregulated
WBPaper00061479:HDA-1_interacting_protein
WBPaper00061527:snr-3-rbx-1
WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
WBPaper00062159:hda-2(ok1479)_downregulated
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064156:lbp-3(overexpress)_downregulated
WBPaper00064494:postdauer_downregulated_AWA
WBPaper00064716:paraquat_upregulated
WBPaper00065199:Transgeneration-starvation_regulated_fed
WBPaper00065373:sek-1(km4)_upregulated_cisplatin
WBPaper00065945:epidermis-rpoa-2(-)_downregulated_protein
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066038:mip-1(how5)_downregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
cgc4489_group_4
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00031532:Larva_Pan_Neuronal_Depleted
WBPaper00032165:differentially_expressed_with_age_medoid_5
WBPaper00032948:FedUp
WBPaper00036286:Pattern_F
WBPaper00038231:Cry5B_1.5-fold_downregulated
WBPaper00038231:Cry5B_2-fold_downregulated
WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2down
WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00042128:gei-8(ok1671)_downregulated
WBPaper00048989:N2_allantoin_upregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
[cgc5767]:cluster_66
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(66_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_MD
[cgc5767]:expression_class_MD_pd(23_min)
[cgc5767]:expression_class_ME
[cgc6390]:oogenesis-enriched
Interaction (362)
Map_infoMapIIIPosition-2.37212Error0.002052
PositivePositive_cloneF26F4Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00029038
WBPaper00038491
WBPaper00048493
WBPaper00055090
WBPaper00064934
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene