WormBase Tree Display for Gene: WBGene00017827

WBGene00017827 SMap: S_parent: Sequence: F26F4
  Identity: Version: 1
    Name: Sequence_name: F26F4.5
      Molecular_name: F26F4.5
        F26F4.5.1
        CE29289
        F26F4.5.2
      Other_name: CELE_F26F4.5 Accession_evidence: NDB BX284603
      Public_name: F26F4.5
    DB_info: Database: AceView gene 3F978
        WormQTL gene WBGene00017827
        WormFlux gene WBGene00017827
        NDB locus_tag CELE_F26F4.5
        NCBI gene 175653
        RefSeq protein NM_065623.7
        TrEMBL UniProtAcc Q19816
        UniProt_GCRP UniProtAcc Q19816
        OMIM gene 614140
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:59 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (23)
    RNASeq_FPKM (74)
    GO_annotation: 00065928
      00065929
      00065930
    Contained_in_operon: CEOP3232
    Ortholog (27)
    Structured_description: Automated_description: Predicted to be involved in actin cytoskeleton organization. Predicted to be located in microtubule organizing center. Predicted to be part of filamentous actin. Human ortholog(s) of this gene implicated in Teebi hypertelorism syndrome 1 and oblique facial clefting 1. Is an ortholog of human SPECC1L (sperm antigen with calponin homology and coiled-coil domains 1 like). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0080698 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:29022)
      DOID:0111706 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:29022)
  Molecular_info: Corresponding_CDS: F26F4.5
    Corresponding_transcript: F26F4.5.1
      F26F4.5.2
    Other_sequence: CJC11164_1
      CBC04044_1
      CRC06540_1
      CR03497
      CBC16256_1
    Associated_feature: WBsf666426
      WBsf666832
      WBsf992239
      WBsf226595
  Experimental_info: RNAi_result: WBRNAi00007752 Inferred_automatically: RNAi_primary
      WBRNAi00005256 Inferred_automatically: RNAi_primary
      WBRNAi00001351 Inferred_automatically: RNAi_primary
      WBRNAi00045678 Inferred_automatically: RNAi_primary
      WBRNAi00013965 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1012173
      Expr1037660
      Expr1149589
      Expr2003036
      Expr2021250
    Drives_construct: WBCnstr00026983
    Construct_product: WBCnstr00026983
    Microarray_results (20)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00044736:rising_dev_expression
      WBPaper00044760:germline_specific
      WBPaper00045521:Gender_Neutral
      WBPaper00045974:NSM_enriched_DSN-treated_RNAseq
      WBPaper00048611:MnCl2_downregulated
      WBPaper00048690:hermaphrodite-Z1-Z4-daughter_enriched
      WBPaper00048762:FOG-3_associated
      WBPaper00048988:daf-2(e1370)_downregulated_neuron
      WBPaper00048988:neuron_expressed
      WBPaper00049942:hsf-1(RNAi)_upregulated
      WBPaper00050234:lin-28(RNAi)_upregulated
      WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00051039:germline_enriched
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053321:PGCs_enriched_NuGen
      WBPaper00053388:dauer_regulated_Cluster2
      WBPaper00053814:25C_downregulated_PY79
      WBPaper00054792:FOG-3_interacting
      WBPaper00055334:DLC-1_interacting
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00055354:Rapamycin-Allantoin_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056034:pals-22(jy3)_downregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056165:MINA-1_interacting_mRNA
      WBPaper00056443:sek-1(km4)_downregulated
      WBPaper00056826:SGP_biased
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00059664:srbc-48(ac23)_downregulated
      WBPaper00059763:neuron_expressed
      WBPaper00059824:rnp-6(dh1127)_regulated_OP50
      WBPaper00060014:set-2(tm1630)_upregulated
      WBPaper00060445:ikb-1(nr2027)_upregulated_L4
      WBPaper00060445:nfki-1(cer1)_upregulated_L4
      WBPaper00060459:bcat-1(RNAi)_downregulated
      WBPaper00060661:sensory-neuron_depleted
      WBPaper00060909:atfs-1(cmh15)_upregulated
      WBPaper00061007:S.aquatilis_downregulated
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061340:I1_parent
      WBPaper00061340:Neuroblast_ADF_AWB
      WBPaper00061340:Neuroblast_AFD_RMD
      WBPaper00061340:Parents_of_Y_DA6_DA7_DA9
      WBPaper00061341:28C_24h_downregulated
      WBPaper00061527:daf-18_2911-ced-2_4092
      WBPaper00061527:ima-1_20458-bath-41
      WBPaper00061818:ELKS-1_interacting
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064505:tamoxifen_upregulated
      WBPaper00064716:paraquat_upregulated
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065841:30_4
      WBPaper00065984:pals-17(syb3980)_upregulated
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      cgc4386_cluster_5_4
      cgc4489_group_25
      WBPaper00025032:cluster_11
      WBPaper00025032:cluster_56
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00031003:0hr_muscle_depleted
      WBPaper00031003:24hr_muscle_depleted
      WBPaper00031003:total_muscle_depleted
      WBPaper00034739:N2lessDR1350
      WBPaper00034757:down_by_oxidative_stress
      WBPaper00035084:L2_enriched_AIN-2_IP
      WBPaper00035084:L3_enriched_AIN-2_IP
      WBPaper00035084:L4_enriched_AIN-2_IP
      WBPaper00035504:daf-2(e1370)_upregulated
      WBPaper00035905:FBF-1_Associated
      WBPaper00036130:mir-243_down_regulated
      WBPaper00036286:Pattern_B
      WBPaper00037695:DD_3-day
      WBPaper00038060:SUMO-1_upregulated
      WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_regulated_aging
      WBPaper00041002:HF_3d_2.0mM_Down
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00041939:control_vs_UVC-exposed_51h
      WBPaper00042331:a-SWCNTs_downregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_SM
      [cgc6390]:Cluster_E
    Interaction (26)
  Map_info: Positive: Positive_clone: F26F4 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: III -2.40778
  Reference: WBPaper00060275
  Method: Gene