WormBase Tree Display for Gene: WBGene00017132

WBGene00017132 SMap: S_parent: Sequence: F07F6
  Identity: Version: 7
    Name: CGC_name: tofu-6
      Sequence_name: EEED8.1
      Molecular_name: EEED8.1
        EEED8.1.1
        CE26746
      Other_name: mel-2 Person_evidence: WBPerson314
        mel-47 Person_evidence: WBPerson629
            WBPerson314
        CELE_EEED8.1 Accession_evidence: NDB BX284602
      Public_name: tofu-6
    DB_info: Database: AceView gene 2F713
        WormQTL gene WBGene00017132
        NDB locus_tag CELE_EEED8.1
        NCBI gene 24104386
        RefSeq protein NM_001306578.5
        SwissProt UniProtAcc Q09293
        UniProt_GCRP UniProtAcc Q09293
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:58 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 01 Apr 2005 11:05:24 WBPerson2970 Name_change: CGC_name: tudr-1
        3 16 Oct 2006 16:56:31 WBPerson2970 Name_change: CGC_name: mel-47
                Other_name: tudr-1
        4 28 Mar 2014 15:50:22 WBPerson2970 Name_change: CGC_name: tofu-6
                Other_name: mel-47
        5 02 Sep 2014 12:40:48 WBPerson2970 Name_change: CGC_name: mel-47
                Other_name: tofu-6
        6 25 Mar 2015 15:33:40 WBPerson2970 Event: Acquires_merge: WBGene00003188
              Name_change: CGC_name: tofu-6
                Other_name: mel-2
        7 25 Mar 2015 15:34:24 WBPerson2970 Name_change: Other_name: mel-47
      Acquires_merge: WBGene00003188
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: tofu
    Reference_allele: WBVar00275444
      WBVar00088001
    Allele (31)
    Legacy_information: [C.elegansII] it20 : strict maternal effect embryonic lethal. OA1: it22. [Kemphues et al. 1988]
    Strain: WBStrain00023566
      WBStrain00031149
    RNASeq_FPKM (74)
    GO_annotation (33)
    Ortholog: WBGene00057369 Caenorhabditis remanei From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00025454 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00141283 Caenorhabditis brenneri From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00148364 Caenorhabditis brenneri From_analysis: OMA
            WormBase-Compara
      WBGene00132897 Caenorhabditis japonica From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      CBOVI.g7309 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP26.g9052 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g8396 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g14642 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g23101 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g8791 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g20328 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g24801 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g7154 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00522.g11828 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-tofu-6 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g11412 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00082.g3672 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_06051 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_006024 Caenorhabditis remanei From_analysis: WormBase-Compara
      Sp34_20093600 Caenorhabditis inopinata From_analysis: WormBase-Compara
      Sp34_20102500 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g4494 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable RNA binding activity. Involved in several processes, including embryonic cleavage; mitotic sister chromatid separation; and nucleic acid metabolic process. Located in nucleus and perinuclear region of cytoplasm. Expressed in germ line. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: EEED8.1
    Corresponding_transcript: EEED8.1.1
    Other_sequence: CRC09352_1
      CJC06104_1
      CR00454
      CBC05784_1
    Associated_feature: WBsf644193
      WBsf644194
      WBsf221278
  Experimental_info: RNAi_result: WBRNAi00113939 Inferred_automatically: RNAi_primary
      WBRNAi00043689 Inferred_automatically: RNAi_primary
      WBRNAi00022694 Inferred_automatically: RNAi_primary
      WBRNAi00103067 Inferred_automatically: RNAi_primary
      WBRNAi00033559 Inferred_automatically: RNAi_primary
      WBRNAi00008592 Inferred_automatically: RNAi_primary
      WBRNAi00113938 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr8287
      Expr14432
      Expr16061
      Expr1026068
      Expr1037359
      Expr1147673
      Expr2017448
      Expr2035587
    Drives_construct: WBCnstr00016926
      WBCnstr00037834
      WBCnstr00040803
      WBCnstr00042743
    Construct_product: WBCnstr00016926
      WBCnstr00037834
      WBCnstr00040803
      WBCnstr00042743
    Regulate_expr_cluster: WBPaper00056900:TOFU-6_interacting
    Microarray_results (20)
    Expression_cluster (173)
    Interaction (472)
  Map_info: Map: II Position: -1.63708 Error: 0.021258
    Positive: Positive_clone: EEED8 Inferred_automatically: From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 5279
        4538
      Pos_neg_data: 4469
    Pseudo_map_position
  Reference (11)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene