WormBase Tree Display for Gene: WBGene00017132
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WBGene00017132 | SMap | S_parent | Sequence | F07F6 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 7 | |||||||
Name | CGC_name | tofu-6 | |||||||
Sequence_name | EEED8.1 | ||||||||
Molecular_name | EEED8.1 | ||||||||
EEED8.1.1 | |||||||||
CE26746 | |||||||||
Other_name | mel-2 | Person_evidence | WBPerson314 | ||||||
mel-47 | Person_evidence | WBPerson629 | |||||||
WBPerson314 | |||||||||
CELE_EEED8.1 | Accession_evidence | NDB | BX284602 | ||||||
Public_name | tofu-6 | ||||||||
DB_info | Database | AceView | gene | 2F713 | |||||
WormQTL | gene | WBGene00017132 | |||||||
NDB | locus_tag | CELE_EEED8.1 | |||||||
NCBI | gene | 24104386 | |||||||
RefSeq | protein | NM_001306578.5 | |||||||
SwissProt | UniProtAcc | Q09293 | |||||||
UniProt_GCRP | UniProtAcc | Q09293 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 01 Apr 2005 11:05:24 | WBPerson2970 | Name_change | CGC_name | tudr-1 | ||||
3 | 16 Oct 2006 16:56:31 | WBPerson2970 | Name_change | CGC_name | mel-47 | ||||
Other_name | tudr-1 | ||||||||
4 | 28 Mar 2014 15:50:22 | WBPerson2970 | Name_change | CGC_name | tofu-6 | ||||
Other_name | mel-47 | ||||||||
5 | 02 Sep 2014 12:40:48 | WBPerson2970 | Name_change | CGC_name | mel-47 | ||||
Other_name | tofu-6 | ||||||||
6 | 25 Mar 2015 15:33:40 | WBPerson2970 | Event | Acquires_merge | WBGene00003188 | ||||
Name_change | CGC_name | tofu-6 | |||||||
Other_name | mel-2 | ||||||||
7 | 25 Mar 2015 15:34:24 | WBPerson2970 | Name_change | Other_name | mel-47 | ||||
Acquires_merge | WBGene00003188 | ||||||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | tofu | ||||||||
Reference_allele | WBVar00275444 | ||||||||
WBVar00088001 | |||||||||
Allele (31) | |||||||||
Legacy_information | [C.elegansII] it20 : strict maternal effect embryonic lethal. OA1: it22. [Kemphues et al. 1988] | ||||||||
Strain | WBStrain00023566 | ||||||||
WBStrain00031149 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (33) | |||||||||
Ortholog | WBGene00057369 | Caenorhabditis remanei | From_analysis | OMA | |||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00025454 | Caenorhabditis briggsae | From_analysis | Hillier-set | ||||||
OrthoMCL | |||||||||
OMA | |||||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00141283 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00148364 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
WormBase-Compara | |||||||||
WBGene00132897 | Caenorhabditis japonica | From_analysis | OMA | ||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
CBOVI.g7309 | Caenorhabditis bovis | From_analysis | WormBase-Compara | ||||||
CSP26.g9052 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
CSP28.g8396 | Caenorhabditis panamensis | From_analysis | WormBase-Compara | ||||||
CSP29.g14642 | Caenorhabditis becei | From_analysis | WormBase-Compara | ||||||
CSP31.g23101 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
CSP32.g8791 | Caenorhabditis sulstoni | From_analysis | WormBase-Compara | ||||||
CSP38.g20328 | Caenorhabditis quiockensis | From_analysis | WormBase-Compara | ||||||
CSP39.g24801 | Caenorhabditis waitukubuli | From_analysis | WormBase-Compara | ||||||
CSP40.g7154 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
Cang_2012_03_13_00522.g11828 | Caenorhabditis angaria | From_analysis | WormBase-Compara | ||||||
Cni-tofu-6 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
Csp11.Scaffold629.g11412 | Caenorhabditis tropicalis | From_analysis | WormBase-Compara | ||||||
Csp5_scaffold_00082.g3672 | Caenorhabditis sinica | From_analysis | WormBase-Compara | ||||||
FL83_06051 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
GCK72_006024 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
Sp34_20093600 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
Sp34_20102500 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
chrII_pilon.g4494 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Automated_description | Predicted to enable RNA binding activity. Involved in several processes, including embryonic cleavage; mitotic sister chromatid separation; and nucleic acid metabolic process. Located in nucleus and perinuclear region of cytoplasm. Expressed in germ line. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | EEED8.1 | |||||||
Corresponding_transcript | EEED8.1.1 | ||||||||
Other_sequence (4) | |||||||||
Associated_feature | WBsf644193 | ||||||||
WBsf644194 | |||||||||
WBsf221278 | |||||||||
Experimental_info | RNAi_result | WBRNAi00113939 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00043689 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00022694 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00103067 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00033559 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00008592 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00113938 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr8287 | ||||||||
Expr14432 | |||||||||
Expr16061 | |||||||||
Expr1026068 | |||||||||
Expr1037359 | |||||||||
Expr1147673 | |||||||||
Expr2017448 | |||||||||
Expr2035587 | |||||||||
Drives_construct | WBCnstr00016926 | ||||||||
WBCnstr00037834 | |||||||||
WBCnstr00040803 | |||||||||
WBCnstr00042743 | |||||||||
Construct_product | WBCnstr00016926 | ||||||||
WBCnstr00037834 | |||||||||
WBCnstr00040803 | |||||||||
WBCnstr00042743 | |||||||||
Regulate_expr_cluster | WBPaper00056900:TOFU-6_interacting | ||||||||
Microarray_results (20) | |||||||||
Expression_cluster (173) | |||||||||
Interaction (472) | |||||||||
Map_info | Map | II | Position | -1.63708 | Error | 0.021258 | |||
Positive | Positive_clone | EEED8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Mapping_data | Multi_point | 5279 | |||||||
4538 | |||||||||
Pos_neg_data | 4469 | ||||||||
Pseudo_map_position | |||||||||
Reference (11) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |