WormBase Tree Display for Gene: WBGene00017080
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| WBGene00017080 | SMap | S_parent | Sequence | DC2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | lec-12 | Paper_evidence | WBPaper00040257 | |||||
| Sequence_name | DC2.3 | ||||||||
| Molecular_name (21) | |||||||||
| Other_name | CELE_DC2.3 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | lec-12 | ||||||||
| DB_info | Database | AceView | gene | 5A687 | |||||
| WormQTL | gene | WBGene00017080 | |||||||
| WormFlux | gene | WBGene00017080 | |||||||
| NDB | locus_tag | CELE_DC2.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00017080|UniProtKB=Q5ZR27 | |||||||
| family | PTHR11346 | ||||||||
| NCBI | gene | 178548 | |||||||
| RefSeq | protein | NM_001028587.4 | |||||||
| NM_001313140.3 | |||||||||
| NM_001313139.3 | |||||||||
| NM_001028588.6 | |||||||||
| NM_001313138.1 | |||||||||
| NM_001313136.3 | |||||||||
| NM_001313137.3 | |||||||||
| TREEFAM | TREEFAM_ID | TF323681 | |||||||
| TrEMBL | UniProtAcc | A0A0K3AUS0 | |||||||
| A0A0K3AVE8 | |||||||||
| A0A0K3ASC7 | |||||||||
| A0A0K3ARW6 | |||||||||
| H2KZJ9 | |||||||||
| Q5ZR27 | |||||||||
| A0A0K3AXP2 | |||||||||
| UniProt_GCRP | UniProtAcc | Q5ZR27 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 13 Oct 2011 15:59:42 | WBPerson2970 | Name_change | CGC_name | lec-12 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lec | ||||||||
| Allele (123) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00000872 | ||||||||
| 00000982 | |||||||||
| 00000983 | |||||||||
| 00022350 | |||||||||
| 00122562 | |||||||||
| Contained_in_operon | CEOP5588 | ||||||||
| Ortholog (45) | |||||||||
| Paralog (27) | |||||||||
| Structured_description | Automated_description | Predicted to enable galactoside binding activity. Predicted to be located in membrane. Is an ortholog of human LGALS4 (galectin 4). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | DC2.3a | |||||||
| DC2.3b | |||||||||
| DC2.3c | |||||||||
| DC2.3d | |||||||||
| DC2.3e | |||||||||
| DC2.3f | |||||||||
| DC2.3g | |||||||||
| Corresponding_CDS_history | DC2.3:wp131 | ||||||||
| DC2.3a:wp152 | |||||||||
| DC2.3b:wp188 | |||||||||
| Corresponding_transcript | DC2.3a.1 | ||||||||
| DC2.3b.1 | |||||||||
| DC2.3c.1 | |||||||||
| DC2.3d.1 | |||||||||
| DC2.3e.1 | |||||||||
| DC2.3f.1 | |||||||||
| DC2.3g.1 | |||||||||
| Other_sequence (37) | |||||||||
| Associated_feature | WBsf661094 | ||||||||
| WBsf999096 | |||||||||
| WBsf1019029 | |||||||||
| WBsf231310 | |||||||||
| WBsf231311 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00000892 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00043538 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1022072 | ||||||||
| Expr1037340 | |||||||||
| Expr1147531 | |||||||||
| Expr2013033 | |||||||||
| Expr2031265 | |||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (75) | |||||||||
| Interaction | WBInteraction000039136 | ||||||||
| WBInteraction000043884 | |||||||||
| WBInteraction000043889 | |||||||||
| WBInteraction000043890 | |||||||||
| WBInteraction000140055 | |||||||||
| WBInteraction000440230 | |||||||||
| WBInteraction000553241 | |||||||||
| Map_info | Map | V | Position | -20.01 | Error | 6.3e-05 | |||
| Positive | Positive_clone | DC2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00040257 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
