WormBase Tree Display for Gene: WBGene00017080
expand all nodes | collapse all nodes | view schema
WBGene00017080 | SMap | S_parent | Sequence | DC2 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | lec-12 | Paper_evidence | WBPaper00040257 | |||
Sequence_name | DC2.3 | ||||||
Molecular_name (21) | |||||||
Other_name | CELE_DC2.3 | Accession_evidence | NDB | BX284605 | |||
Public_name | lec-12 | ||||||
DB_info | Database | AceView | gene | 5A687 | |||
WormQTL | gene | WBGene00017080 | |||||
WormFlux | gene | WBGene00017080 | |||||
NDB | locus_tag | CELE_DC2.3 | |||||
Panther | gene | CAEEL|WormBase=WBGene00017080|UniProtKB=Q5ZR27 | |||||
family | PTHR11346 | ||||||
NCBI | gene | 178548 | |||||
RefSeq | protein | NM_001028587.4 | |||||
NM_001313140.3 | |||||||
NM_001313139.3 | |||||||
NM_001028588.6 | |||||||
NM_001313138.1 | |||||||
NM_001313136.3 | |||||||
NM_001313137.3 | |||||||
TREEFAM | TREEFAM_ID | TF323681 | |||||
TrEMBL | UniProtAcc | A0A0K3AUS0 | |||||
A0A0K3AVE8 | |||||||
A0A0K3ASC7 | |||||||
A0A0K3ARW6 | |||||||
H2KZJ9 | |||||||
Q5ZR27 | |||||||
A0A0K3AXP2 | |||||||
UniProt_GCRP | UniProtAcc | Q5ZR27 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | lec | ||||||
Allele (123) | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00000872 | ||||||
00000982 | |||||||
00000983 | |||||||
00022350 | |||||||
00122562 | |||||||
Contained_in_operon | CEOP5588 | ||||||
Ortholog (45) | |||||||
Paralog (27) | |||||||
Structured_description | Automated_description | Predicted to enable galactoside binding activity. Predicted to be located in membrane. Is an ortholog of human LGALS4 (galectin 4). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | DC2.3a | |||||
DC2.3b | |||||||
DC2.3c | |||||||
DC2.3d | |||||||
DC2.3e | |||||||
DC2.3f | |||||||
DC2.3g | |||||||
Corresponding_CDS_history | DC2.3:wp131 | ||||||
DC2.3a:wp152 | |||||||
DC2.3b:wp188 | |||||||
Corresponding_transcript | DC2.3a.1 | ||||||
DC2.3b.1 | |||||||
DC2.3c.1 | |||||||
DC2.3d.1 | |||||||
DC2.3e.1 | |||||||
DC2.3f.1 | |||||||
DC2.3g.1 | |||||||
Other_sequence (37) | |||||||
Associated_feature | WBsf661094 | ||||||
WBsf999096 | |||||||
WBsf1019029 | |||||||
WBsf231310 | |||||||
WBsf231311 | |||||||
Experimental_info | RNAi_result | WBRNAi00000892 | Inferred_automatically | RNAi_primary | |||
WBRNAi00043538 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1022072 | ||||||
Expr1037340 | |||||||
Expr1147531 | |||||||
Expr2013033 | |||||||
Expr2031265 | |||||||
Microarray_results (22) | |||||||
Expression_cluster (75) | |||||||
Interaction | WBInteraction000039136 | ||||||
WBInteraction000043884 | |||||||
WBInteraction000043889 | |||||||
WBInteraction000043890 | |||||||
WBInteraction000140055 | |||||||
WBInteraction000440230 | |||||||
WBInteraction000553241 | |||||||
Map_info | Map | V | Position | -20.01 | Error | 6.3e-05 | |
Positive | Positive_clone | DC2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00038491 | ||||||
WBPaper00040257 | |||||||
WBPaper00055090 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |