WormBase Tree Display for Gene: WBGene00017016
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| WBGene00017016 | SMap | S_parent | Sequence | D1014 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | snap-1 | Person_evidence | WBPerson451 | |||||
| Sequence_name | D1014.3 | ||||||||
| Molecular_name | D1014.3a | ||||||||
| D1014.3a.1 | |||||||||
| CE38494 | |||||||||
| D1014.3b | |||||||||
| CE53052 | |||||||||
| D1014.3b.1 | |||||||||
| D1014.3b.2 | |||||||||
| D1014.3b.3 | |||||||||
| Other_name | phi-29 | Person_evidence | WBPerson2582 | ||||||
| CELE_D1014.3 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | snap-1 | ||||||||
| DB_info | Database | AceView | gene | 5I613 | |||||
| WormQTL | gene | WBGene00017016 | |||||||
| WormFlux | gene | WBGene00017016 | |||||||
| NDB | locus_tag | CELE_D1014.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00017016|UniProtKB=Q18921 | |||||||
| family | PTHR13768 | ||||||||
| NCBI | gene | 179193 | |||||||
| RefSeq | protein | NM_001392555.1 | |||||||
| NM_072698.7 | |||||||||
| TrEMBL | UniProtAcc | A0A486WXT8 | |||||||
| Q18921 | |||||||||
| UniProt_GCRP | UniProtAcc | Q18921 | |||||||
| OMIM | gene | 611270 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 17 Mar 2005 13:54:35 | WBPerson2970 | Name_change | Other_name | phi-29 | ||||
| 3 | 07 Sep 2006 08:05:50 | WBPerson2970 | Name_change | CGC_name | snap-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | snap | ||||||||
| Allele (39) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Contained_in_operon | CEOP5180 | ||||||||
| Ortholog (48) | |||||||||
| Paralog | WBGene00013345 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00044794 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable soluble NSF attachment protein activity and syntaxin binding activity. Involved in IRE1-mediated unfolded protein response. Predicted to be located in membrane. Predicted to be part of SNARE complex. Human ortholog(s) of this gene implicated in Alzheimer's disease; Down syndrome; and developmental and epileptic encephalopathy 107. Is an ortholog of human NAPA (NSF attachment protein alpha) and NAPB (NSF attachment protein beta). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0070393 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:15751) | ||||
| DOID:10652 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:15751) | ||||||
| DOID:14250 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:15751) | ||||||
| Molecular_info | Corresponding_CDS | D1014.3a | |||||||
| D1014.3b | |||||||||
| Corresponding_CDS_history | D1014.3:wp142 | ||||||||
| Corresponding_transcript | D1014.3a.1 | ||||||||
| D1014.3b.1 | |||||||||
| D1014.3b.2 | |||||||||
| D1014.3b.3 | |||||||||
| Other_sequence (35) | |||||||||
| Associated_feature | WBsf646987 | ||||||||
| WBsf646988 | |||||||||
| WBsf661465 | |||||||||
| WBsf661466 | |||||||||
| WBsf981966 | |||||||||
| WBsf1000585 | |||||||||
| WBsf232064 | |||||||||
| WBsf232065 | |||||||||
| Experimental_info | RNAi_result (32) | ||||||||
| Expr_pattern | Expr5609 | ||||||||
| Expr1016527 | |||||||||
| Expr1037312 | |||||||||
| Expr1147322 | |||||||||
| Expr2015937 | |||||||||
| Expr2034170 | |||||||||
| Drives_construct | WBCnstr00004056 | ||||||||
| WBCnstr00027636 | |||||||||
| Construct_product | WBCnstr00027636 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (101) | |||||||||
| Interaction (85) | |||||||||
| Map_info | Map | V | Position | 1.04508 | Error | 0.011611 | |||
| Positive | Positive_clone | D1014 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
