WormBase Tree Display for Gene: WBGene00016943
expand all nodes | collapse all nodes | view schema
WBGene00016943 | SMap | S_parent | Sequence | C55B7 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | acdh-1 | |||||
Sequence_name | C55B7.4 | ||||||
Molecular_name | C55B7.4a | ||||||
C55B7.4a.1 | |||||||
CE09015 | |||||||
C55B7.4b | |||||||
CE32840 | |||||||
C55B7.4b.1 | |||||||
C55B7.4b.2 | |||||||
Other_name | dod-12 | ||||||
CELE_C55B7.4 | Accession_evidence | NDB | BX284601 | ||||
Public_name | acdh-1 | ||||||
DB_info | Database | AceView | gene | 1H75 | |||
WormQTL | gene | WBGene00016943 | |||||
WormFlux | gene | WBGene00016943 | |||||
NDB | locus_tag | CELE_C55B7.4 | |||||
Panther | gene | CAEEL|WormBase=WBGene00016943|UniProtKB=H2KZG6 | |||||
family | PTHR43884 | ||||||
NCBI | gene | 172358 | |||||
RefSeq | protein | NM_001383261.2 | |||||
NM_001380557.1 | |||||||
TREEFAM | TREEFAM_ID | TF105055 | |||||
TrEMBL | UniProtAcc | H2KZG6 | |||||
Q8IAB6 | |||||||
UniProt_GCRP | UniProtAcc | H2KZG6 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | acdh | ||||||
Allele (22) | |||||||
Strain | WBStrain00032056 | ||||||
WBStrain00036246 | |||||||
WBStrain00036314 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00022255 | ||||||
00022256 | |||||||
00022257 | |||||||
00022258 | |||||||
00022259 | |||||||
00022260 | |||||||
00122446 | |||||||
00122447 | |||||||
Contained_in_operon | CEOP1907 | ||||||
Ortholog (38) | |||||||
Paralog (22) | |||||||
Structured_description | Concise_description | acdh-1 encodes a short-chain acyl-CoA dehydrogenase; ACDH-1 is predicted to be a mitochondrial enzyme that catalyzes the first step of fatty acid beta-oxidation and thus plays a key role in energy production; steady-state acdh-1 mRNA levels are under the control of the MDT-15 mediator complex subunit; in addition, gene expression studies indicate that acdh-1 expression is upregulated in daf-2 mutant animals, but downregulated in fasted animals; loss of acdh-1 activity via RNAi can shorten lifespan. | Paper_evidence | WBPaper00005976 | |||
WBPaper00026800 | |||||||
WBPaper00027365 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 10 Aug 2006 00:00:00 | ||||||
Automated_description | Predicted to enable acyl-CoA dehydrogenase activity. Involved in defense response to Gram-negative bacterium and innate immune response. Predicted to be located in mitochondrion. Expressed in E lineage cell; hypodermis; and neurons. Is an ortholog of human ACADSB (acyl-CoA dehydrogenase short/branched chain). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | C55B7.4a | |||||
C55B7.4b | |||||||
Corresponding_transcript | C55B7.4a.1 | ||||||
C55B7.4b.1 | |||||||
C55B7.4b.2 | |||||||
Other_sequence (19) | |||||||
Associated_feature | WBsf643373 | ||||||
WBsf643374 | |||||||
WBsf978997 | |||||||
WBsf217836 | |||||||
WBsf217837 | |||||||
WBsf217838 | |||||||
WBsf217839 | |||||||
WBsf217840 | |||||||
Experimental_info | RNAi_result (14) | ||||||
Expr_pattern | Expr9109 | ||||||
Expr13237 | |||||||
Expr15754 | |||||||
Expr15906 | |||||||
Expr1025163 | |||||||
Expr1037269 | |||||||
Expr1147209 | |||||||
Expr2009132 | |||||||
Expr2027369 | |||||||
Drives_construct | WBCnstr00006161 | ||||||
WBCnstr00013727 | |||||||
WBCnstr00017529 | |||||||
WBCnstr00017596 | |||||||
WBCnstr00027688 | |||||||
Construct_product | WBCnstr00027688 | ||||||
Microarray_results (34) | |||||||
Expression_cluster (410) | |||||||
Interaction (112) | |||||||
Map_info | Map | I | Position | 1.16367 | Error | 0.004812 | |
Positive | Positive_clone | C55B7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 5183 | |||||
4359 | |||||||
5614 | |||||||
Pseudo_map_position | |||||||
Reference (38) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |